Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00107 ATGAGAAACGACGACCGACTTCCGTCGAGGATCTGGATCGAAACTAAAAAGCTTTGGAAAATCGTGGGTCCTTCCATTTTCAACCGTTTGGCTACTTTCTCCACGCTCGTCGTCACCCAAGCTTTTGCAGGTCATCTCGGCGACGTTCAATTTGCTTCTGTCGCCATAGCTTGTACTATCATTGTGGCCTTTAATTTTGGGTTTTTCAATATGTTTTCAACCCAACTCTGTGTCATGCAGTTAGGAATGGCGAGCGCTCTAGAGACGCTATGTGGGCAAGCGTTTGGAGCAAAAAGGTTTCACATGTTGGGAATATACTTGCAGAGATCGTGGATAGTTCTCTTTTTCTGTGGCTTATTGATCCTACCCGTTTACATATTCGCCGCGCCGATTCTGAAACTGCTCGGACAAGCCGACGACGTGGCGGAGATGACGGGGCTGGTGGCTCTGTATCTCATCCCCCTAAACTTCAGCTTCGCCTTCCAGTTTCCATTGCAGAGGTTCTTGCAGTGCCAGCTGAAAACCGCCATTCTAGCTTGGGTTTCTCTCGCTGGTTTGATCCTCAACGTCTTCTCCTGCTGGCTTTTCATCAACGTTTTGGATTTAGGGGTCGTCGGAGCTGCTCTCTCTCTCGATATTGCATGGTGGTTCATCGGATTAGGATACTATATTTACACAGTGTTTGGTTGGTGTCCTTTGACTTGGAATGGCTTTTCATCAGAAGCATTTTCTGAGCTCTGGGAATTCGTCAAACTCTCTGTTGCTTCTGGGTTTATGCTCAGTTTGGAGACCTGGTATTATCGAATTCTCGTCCTGCTCACAGGGCACTTGAAAAATGCTACCATCGCCGTCGATGCTCTGTCCGTTTGCTTGAGCATCAATGGATGGGAGATGATGATTCATGTTGCATTCCTCGGTGGTACCGGAGTAAGAGTAGCAAACGAACTGGGAGCTGGAAATGGGAAGGCAGCCAAATTTGCGACCCGAGTGTCGGTAGCACAATCAGCGATGATCGGGCTGTTCCTTTGCATAGTTATCGTGGTTCTCCACTCAAAGATCGCCTACATCTTCACTACGAGTAGCGAGGTTGTGGAAGCTGTAAACACACTTTCTTTTCTCTTGGCCTTCACCATTCTTCTGAACAGCGTCCAACCCGTTCTGTCTGGAGTAGCCGTTGGATCAGGGTGGCAATCTTGGGTGGCTTACATAAATCTCTTCTGCTATTACATGATTGGCGTTCCCCTTGGATTTCTCTTGGGCTGGCTCTTCCACTTCGGTGTGGAGGGGATCTGGGGAGGAATGATTCTGGGTGGAACTGGTATCCAGACTGTGATATTAGCCATTATTATCCTAAGAACTAACTGGGAAAACGAGGGTATGGGCACCAAAGACGAAGGAGAAACCCCTTTGTTGTGCTCAGGCGATGACCCAGATGGACGAGAACAGCAACAGTTACTCCATATTGAATCAAATGGTGGAGATTGGGTTGGAAAAACTTGGTTAGAATCTAAGAAAATGTGGCAGATTTCCGGACCCTCCATCTTCAGCCGGCTAGCCATGTTTTCAATCACCGTCGTTACTCAATCATTCGCCGGCCACCTTGGGGACCTCGACCTCGCCGCTATTTCCGTCGGCACCACGGTTATTATTGCCATCAGCTTCGGTTTCTTGCTGGGAATGGCAAGCGCGCTGGAGACGCTCTGTGGCCAAGCGTATGGAGCCAAACAATATCACATGTTGGGTATATATATGCAACGTTCTTGGATTGTTTTATTCGCTTGCGCCATTTGTCTATTGCCTATGTTTGTATTTGCTACTCCATTGCTGAAGTTCATTGGTCAGCCTGAGAATGTTGCTGAGCAGACAGGTTTGGTTGCGATGTGGTTGATTCCATTTCACATGAGCTTTCCTTTTCAGTTCACTCTGCAAAGGTTCTTGCAGAGCCAGTTGAAGACTGGGGTGATAGCCTGGGTCTCAGGAGGGGCTTTGGTACTACATTTGCTTGTGAGTTGGATTTTTGTTTATAAACTTAGGGTGGGGATTGAGTGGACTGCTTTGAGCATTGGTTTTTCATGGTGGGTTTCGGTTTTTGGAATGTTCGGCTATGTTGTTTATGGCAGTTGTGCAAATACATGGACCGGTTTTTCTGTTCGAGCTTTTCATGGCCTTTGGCAGTTCTTCAAGCTTGCAGTGGCATCTGGGGTCATGCTCTTGTTGGAGAACTTCTACTACAGAGTATTAATCATCGTATCCGGATATTTGCATAACGCAGAGGTTGCGGTGGATGCTCTTTCTATATGCATAAGCATTTTTGGATGGGAATCTATGATTCCCCTCGGGTTTTTGGCTGCAACCGGCGTACGAGTAGCAAATGAATTGGGTGCTGGCAATGGAAAAGGAGCAAAGTTTGCAACCACTGTTTCGGTGATGACATCTATGATAGTCGGGATTCTATTTTGGTTGATCATCATGATCTTCCATGGAAAGCTGGCAATGATTTTTACCTCTAGTGTACCTGTAGTATCCATGATCAATGAATTATCAGTCTTCCTTGCCTTCACCATACTTCTCAATTGTATACAACCTGTTCTTTCAGGGGTCGCGGTTGGATCCGGTTGGCAAGCTCTAGTTGCCTTCATCAACATTGGGAGCTATTATTTGATTGGCGTCCCTCTCGGTGTTCTCATGGGATGGTGGTCGTCCTTCGGCTTCAAGCAGGGTCTGTGGGGTGGAATGATCTGTGGAACTGTGATTCAAACGATCGTACTGGCGTTCGTGACGATGAGATGCGAATGGGAAGACGAGGTAAGACCTTCATCCGAAAAACATAAAGTCCAAATCGTAGTCGGAAAAGTTTGA 2859 47.01 MRNDDRLPSRIWIETKKLWKIVGPSIFNRLATFSTLVVTQAFAGHLGDVQFASVAIACTIIVAFNFGFFNMFSTQLCVMQLGMASALETLCGQAFGAKRFHMLGIYLQRSWIVLFFCGLLILPVYIFAAPILKLLGQADDVAEMTGLVALYLIPLNFSFAFQFPLQRFLQCQLKTAILAWVSLAGLILNVFSCWLFINVLDLGVVGAALSLDIAWWFIGLGYYIYTVFGWCPLTWNGFSSEAFSELWEFVKLSVASGFMLSLETWYYRILVLLTGHLKNATIAVDALSVCLSINGWEMMIHVAFLGGTGVRVANELGAGNGKAAKFATRVSVAQSAMIGLFLCIVIVVLHSKIAYIFTTSSEVVEAVNTLSFLLAFTILLNSVQPVLSGVAVGSGWQSWVAYINLFCYYMIGVPLGFLLGWLFHFGVEGIWGGMILGGTGIQTVILAIIILRTNWENEGMGTKDEGETPLLCSGDDPDGREQQQLLHIESNGGDWVGKTWLESKKMWQISGPSIFSRLAMFSITVVTQSFAGHLGDLDLAAISVGTTVIIAISFGFLLGMASALETLCGQAYGAKQYHMLGIYMQRSWIVLFACAICLLPMFVFATPLLKFIGQPENVAEQTGLVAMWLIPFHMSFPFQFTLQRFLQSQLKTGVIAWVSGGALVLHLLVSWIFVYKLRVGIEWTALSIGFSWWVSVFGMFGYVVYGSCANTWTGFSVRAFHGLWQFFKLAVASGVMLLLENFYYRVLIIVSGYLHNAEVAVDALSICISIFGWESMIPLGFLAATGVRVANELGAGNGKGAKFATTVSVMTSMIVGILFWLIIMIFHGKLAMIFTSSVPVVSMINELSVFLAFTILLNCIQPVLSGVAVGSGWQALVAFINIGSYYLIGVPLGVLMGWWSSFGFKQGLWGGMICGTVIQTIVLAFVTMRCEWEDEVRPSSEKHKVQIVVGKV 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 962407 980055 + BLOR15928 Blo17g00107 72495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00107 952 PANTHER PROTEIN DETOXIFICATION 4 461 - -
Blo17g00107 952 CDD MATE_eukaryotic 14 458 IPR045069 GO:0042910|GO:1990961
Blo17g00107 952 TIGRFAM matE: MATE efflux family protein 512 905 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo17g00107 952 TIGRFAM matE: MATE efflux family protein 24 431 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo17g00107 952 PANTHER MULTIDRUG RESISTANCE PROTEIN 488 938 - -
Blo17g00107 952 CDD MATE_eukaryotic 502 937 IPR045069 GO:0042910|GO:1990961
Blo17g00107 952 PANTHER PROTEIN DETOXIFICATION 488 938 - -
Blo17g00107 952 PANTHER MULTIDRUG RESISTANCE PROTEIN 4 461 - -
Blo17g00107 952 Pfam MatE 24 195 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo17g00107 952 Pfam MatE 512 672 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo17g00107 952 Pfam MatE 734 894 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Blo17g00107 952 Pfam MatE 257 418 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00107 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - pop:7486570 716.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00107 Blo-Chr17:962407 Blo09g00070 Blo-Chr9:1209648 7.45E-131 dispersed
Blo17g00107 Blo-Chr17:962407 Blo17g00108 Blo-Chr17:990962 9.75E-179 tandem
Blo17g00107 Blo-Chr17:962407 Blo05g00751 Blo-Chr5:27138770 7.51E-175 wgd
Blo17g00107 Blo-Chr17:962407 Blo06g00067 Blo-Chr6:2267946 1.23E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1315 . . Cone20ag0535 . . . . Blo17g00107 . . Bda13g01375 . Bpe14g00469 . Bma02g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00107 Blo_Chr17 FPKM 0.0 0.0 0.0 0.0 31.215759 35.011135 25.867954 0.0 0.0 0.0