Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00109 ATGAAAGCTTCGACTTTCGGTGGGATCAGATTGTTAGATCATGGAGTTTCGAGTTTCATCTTCTATTTTCTTGTCCTCTTGGCGTTACCGCCGATCGTCACTGGCCAGAATGGAACTCCGGACGGAAATTCTTTTGGGCCGATTGTCAGCCGAAAAACAGCGACTTTATTCATCGTCCTGGTTTCCGTCTTCTTTGTTCTCGGCTTGTTCGCTGTATACGCACGCCACTGCATTGGGGATCGCCGTGGGGTTGGAGGGTTTGTCATCAATCAAGAAACAACCGGTGGCCGGTCTACGATGGCCGCACGAGGACTCGACAGGGCGACCATAGCTAGTTTTCCCACCTTCGCTTACTCGAGCGTCAAGCAGTTTAAGATCGGGAAAGGATCGCTGGAATGCGCAGTGTGCTTAAACGAGTTCGCCGACGACGAGAGGCTCCGGTTGTTGCCAAAATGCAGCCATGTTTTTCACTCCGATTGCGTTGATACTTGGTTGACCTCTCACTCCACCTGCCCCCTTTGCCGGGACAACCTGGTTCCTGTGATCGGCTGCGGCAATCTATCCTTCTCTTCGCCAGTGCACTTCTATCATAATTCCGGCGAGGGCGAAGCTGGCGATAGATCACTTCCAAACGAGTCAGATAACAGAGTGGCAATTCACGTTGCTGAAAATACGAATCCTAATCAAACCAACTCAAATTTATGTCCGCTACCGCACCGGCCAGTCAGGTCGCGATCTACTGGGAGGCGATTAAACGAAATATTTCTTCGTTCACACACGACAGGCCACTCGCTGGTTCAACCCACAGAAAACCACGAGCGGTTTACGTTAAGATTGCCGGAGGAGGTCCGGAGTCGGCTTCTGAACTCAACCGTTCCGTTGAACCGTGCCCGGAGCTTTGCGGGCTTCGGTGAAATGTGGAGCTCAAGGCGGGGCCATCGTACCGGAAGTGGGTCCGGAAAGAACTTGATCTTCCCGACAAACCAGATTGACCCTCGGAGATTCTTCCCCCAAAACGTGTCAGGAACGAATCAGAACTCGGAATCCAGGGTCAACGAAGAGGGGGGAGAACGATCATTCTCCCGGCTCCGGCCGGCAGGCGATGTGCAATTCTAA 1116 52.6 MKASTFGGIRLLDHGVSSFIFYFLVLLALPPIVTGQNGTPDGNSFGPIVSRKTATLFIVLVSVFFVLGLFAVYARHCIGDRRGVGGFVINQETTGGRSTMAARGLDRATIASFPTFAYSSVKQFKIGKGSLECAVCLNEFADDERLRLLPKCSHVFHSDCVDTWLTSHSTCPLCRDNLVPVIGCGNLSFSSPVHFYHNSGEGEAGDRSLPNESDNRVAIHVAENTNPNQTNSNLCPLPHRPVRSRSTGRRLNEIFLRSHTTGHSLVQPTENHERFTLRLPEEVRSRLLNSTVPLNRARSFAGFGEMWSSRRGHRTGSGSGKNLIFPTNQIDPRRFFPQNVSGTNQNSESRVNEEGGERSFSRLRPAGDVQF 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1003174 1004289 - BLOR15930 Blo17g00109 72497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00109 371 MobiDBLite consensus disorder prediction 310 329 - -
Blo17g00109 371 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Blo17g00109 371 MobiDBLite consensus disorder prediction 336 371 - -
Blo17g00109 371 MobiDBLite consensus disorder prediction 336 350 - -
Blo17g00109 371 SMART ring_2 133 174 IPR001841 -
Blo17g00109 371 CDD RING-H2_PA-TM-RING 132 175 - -
Blo17g00109 371 PANTHER RING-H2 FINGER PROTEIN ATL11 41 303 - -
Blo17g00109 371 Pfam Ring finger domain 132 175 IPR001841 -
Blo17g00109 371 MobiDBLite consensus disorder prediction 312 329 - -
Blo17g00109 371 SUPERFAMILY RING/U-box 127 183 - -
Blo17g00109 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 181 IPR013083 -
Blo17g00109 371 PANTHER RING FINGER DOMAIN-CONTAINING 41 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00109 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - jre:108987460 263.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00867 Blo-Chr3:34498974 Blo17g00109 Blo-Chr17:1003174 5.39E-36 dispersed
Blo03g01071 Blo-Chr3:37106883 Blo17g00109 Blo-Chr17:1003174 6.73E-22 dispersed
Blo04g00739 Blo-Chr4:6913514 Blo17g00109 Blo-Chr17:1003174 2.29E-18 dispersed
Blo11g00488 Blo-Chr11:4502163 Blo17g00109 Blo-Chr17:1003174 4.02E-66 dispersed
Blo14g00626 Blo-Chr14:11966287 Blo17g00109 Blo-Chr17:1003174 7.68E-26 dispersed
Blo14g00692 Blo-Chr14:15832503 Blo17g00109 Blo-Chr17:1003174 6.22E-30 dispersed
Blo16g00534 Blo-Chr16:22065263 Blo17g00109 Blo-Chr17:1003174 3.05E-20 dispersed
Blo17g00109 Blo-Chr17:1003174 Blo19g00194 Blo-Chr19:8758782 8.63E-27 dispersed
Blo17g00154 Blo-Chr17:1447739 Blo17g00109 Blo-Chr17:1003174 1.48E-11 dispersed
Blo18g00165 Blo-Chr18:1555144 Blo17g00109 Blo-Chr17:1003174 4.31E-12 dispersed
Blo17g00109 Blo-Chr17:1003174 Blo10g00348 Blo-Chr10:5310702 4.40E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g460 . . Bda01g00896 Bda03g00477 . . . . Cmo05g00544 . . . . . Sed14g0990 Cpe06g00443 . Bhi04g00792 Tan02g2428 Cmetu05g0584 . Hepe10g0467 . Lcy13g1532 . . . . . . . . Cone7ag1259 Cone17ag1200 . Lsi04g02261 Csa03g04472 Chy04g00229 Cme03g01838 Blo17g00109 . . . Bpe02g01132 Bpe14g00468 . Bma02g00126 Sed06g1552 . Cmo09g00565 . Cma05g00516 Car05g00467 Car09g00510 Cpe11g00456 . Bhi09g02473 Tan01g3822 Cmetu04g1810 . Hepe01g2153 Mch11g0691 . Cla11g01406 Cam11g1463 Cec11g1491 Cco11g1487 Clacu11g1624 Cmu11g1441 Cre11g1860 Lsi08g00991 Csa02g02176 Chy03g01341 Cme04g00255
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002449 3 2 1 1 2 1 3 2 2 2 1 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00109 Blo_Chr17 FPKM 0.0 5.525891 12.018079 12.578825 8.397573 8.243353 11.652586 20.6113 28.836443 26.97114