Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00125 ATGGCTTTCGCAGTGGATTTCTGTGACTGTGGAGTAGCTCAGTCAGACCCTTCTGGGTGTGAGCTAATGGACGCACTCGAACCTTTTATGAAGAGTGATTCTTCTTCAACCTCTTCTCGGCTTGCGTCTTCTTCTTCTTCCTCTTTTCCTACCCTCCTTTCCTGCTTTTCCCCCAACCAAACATACCCACATGGGTCGTCTTCTTCCATCACCCAATCGTTTACAGAGCACTACTCAACCCAATGCCCAGACTACCTTTATGTTGAGCAGCCATCTTCGAACGAGCTCAACGGCCTTAGACAAATCCACCAGAATCAAAATGAAACCCAGAAACCTTGGGGAACGATTGACCAGACCACTTCTTTCTGTCCCAAACCCACCAAGATTTACAGAGGAGTGAGACAGAGGCATTGGGGAAAATGGGTCGCTGAGATTCGTCTGCCAAAGAATCGCGCTCGGCTGTGGCTCGGCACCTTTGACACTGCAGACGAAGCAGCGATGGCGTATGATAGGGCCGCTTATAAGCTCAGAGGTGACTCTGCGAGACTCAATTTGCCTCACCTTAAACATCACTGTGGGGAGCATGACATTCTTTATTCATCAGTGGATGCGAAGCTCCAAGCAATTCATCAGAACTTGGCCAATTCGCGGAAACAGGGGAAGAAGGAGAAAACCGCGGATTTAAGAGGAAAATCCAAGTCCCAACAGGCGATAACTGATGCAGAGAGTACCCAAATAGTAGAAATTGGATCAAATGGTTTTGAGCATTACTCCATAGCTATGGCGGAGAGTGAAAATAAATGTGGAGGATCTTCTTCCCCATTTTCCGATCTTACTCGCTCAAACTCACCATGTTGTCAGAATCAGTCTTCGGAGAATTTCATGTTGCAGAATCACCCTCCAGAGATTGATCAGAACTCTGTTTTCCCCTGA 933 47.37 MAFAVDFCDCGVAQSDPSGCELMDALEPFMKSDSSSTSSRLASSSSSSFPTLLSCFSPNQTYPHGSSSSITQSFTEHYSTQCPDYLYVEQPSSNELNGLRQIHQNQNETQKPWGTIDQTTSFCPKPTKIYRGVRQRHWGKWVAEIRLPKNRARLWLGTFDTADEAAMAYDRAAYKLRGDSARLNLPHLKHHCGEHDILYSSVDAKLQAIHQNLANSRKQGKKEKTADLRGKSKSQQAITDAESTQIVEIGSNGFEHYSIAMAESENKCGGSSSPFSDLTRSNSPCCQNQSSENFMLQNHPPEIDQNSVFP 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1158138 1159070 - BLOR15946 Blo17g00125 72513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00125 310 Pfam AP2 domain 130 178 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 MobiDBLite consensus disorder prediction 216 230 - -
Blo17g00125 310 SUPERFAMILY DNA-binding domain 129 187 IPR016177 GO:0003677
Blo17g00125 310 MobiDBLite consensus disorder prediction 265 310 - -
Blo17g00125 310 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 ProSiteProfiles AP2/ERF domain profile. 129 186 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 304 - -
Blo17g00125 310 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 MobiDBLite consensus disorder prediction 214 241 - -
Blo17g00125 310 CDD AP2 128 188 IPR001471 GO:0003700|GO:0006355
Blo17g00125 310 Gene3D AP2/ERF domain 129 187 IPR036955 GO:0003700|GO:0006355
Blo17g00125 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00125 K09286 EREBP; EREBP-like factor - qsu:112038037 214.157
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00700 Blo17g00125 CCT
Blo17g00125 Blo18g00138 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00224 Blo-Chr4:1729127 Blo17g00125 Blo-Chr17:1158138 5.81E-22 dispersed
Blo17g00125 Blo-Chr17:1158138 Blo01g00266 Blo-Chr1:3411639 4.42E-24 dispersed
Blo11g00041 Blo-Chr11:335156 Blo17g00125 Blo-Chr17:1158138 2.30E-61 wgd
Blo12g00700 Blo-Chr12:25285115 Blo17g00125 Blo-Chr17:1158138 1.67E-65 wgd
Blo17g00125 Blo-Chr17:1158138 Blo18g00138 Blo-Chr18:1285485 2.18E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018101 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13492 PF00847 AP2 3.80E-14 CL0081 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00125 Blo_Chr17 FPKM 15.643514 16.896975 20.988121 22.13529 15.077981 13.526183 16.286722 32.994461 32.741817 36.491524