Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00126 ATGGAAGTGAAGGCGAACAACGGGAAGGTGCCCTTGTTGACTGATGATTTCGATCTGATTGCTGCCGTTGCGGAACCGCTGCCTCCGGTGGCTGAAAGAGACTATTGTGACGAAGGAGCTGAGGAGGAGGATAAGACGGGACGGAAAGAGATGGTTCTTGGAAGAAACGTGCACACCACGTGTCTTGCTGTTACAGAGCCAGAGGCTAATGACGAGTTTACCGGTGACAAAGAGGCTTTTATGGCCGGTGTACTGGCTCGGTACAGGAAGACTCTGATCGAGAGGACCAAGCATCATTTAGGTTACCCGTACAATTTGGACTTCGATTATGGGGCATTGGGCCAGTTGCAGCATTTCTCTATCAATAATCTTGGGGATCCGTTTATCGAAAGTAACTATGGTGTGCATTCCAGGCAATTCGAAGTAGGGGTTTTGGATTGGTTTGCACGCCTTTGGGAGATAGAGAAAAATGAGTATTGGGGTTACATAACCAATTGTGGGACTGAAGGTAATCTTCATGGGATTTTAGTCGGGAGGGAAGTTTTACCTGATGGGATTCTTTATGCGTCAAGAGAATCTCATTATTCTGTTTTCAAAGCTGCTAGAATGTATAGAATGGAATGTGTCAAAGTGGGAACTCTGATCTCTGGAGAGATTGATTGCACTGATTTTAAAGCTAAACTGAGTGCTAACAAAGAGAAACCCGCCATTATCAATGTTAATATAGGAACGACGGTGAAAGGAGCCGTCGACAACCTCGATCTCGTGATACAGACTCTCGAGGAATGTGGATTCACCAAGGATCGGTTTTATATTCATTGTGATGGAGCTTTGTTTGGACTTATGATGCCTTTTGTCAAGAAAGTACCGAAGGTTACTTTCAAAAAGCCAATAGGAAGTGTTAGTGTTTCTGGCCACAAATTTGTTGGATGTCCTATGCCTTGCGGTGTCCAAATAACACGGTTGGAGCACATAAATGCACTGTCAAGGAACGTGGAGTATCTTGCCTCAAGAGATGCTACTATCATGGGAAGTCGAAATGGCCATGCTCCAATCTTCCTCTGGTACACCCTCAACAGAAAAGGGTACAAAGGGTTCCAAAAGGAAGTGCAAAAGTGTCTCAGAAATGCACATTACCTTAAGGACCGCCTCAGAGGGGCTGGAATCAGTGCCATGCTGAACGAGCTTAGCAGCACAGTCGTGTTCGAACGACCCTTCGACGAGGAGTTCGTTCGAAAGTGGCAATTGGCATGTGAGGGAAATATTGCTCATGTTGTGGTCATGCCCAATGTCACCATTGAAAAGTTGGATGATTTTCTGACTGATCTAATCGAGAAAAGATCGACATGGTATCAGGATGAGAAGACGAAGCCCCCTTGTGTTGCAGAAGTGATTGGAGCTGAGAATTGTTCTTGCCTGAACCACAAGTAA 1431 45.42 MEVKANNGKVPLLTDDFDLIAAVAEPLPPVAERDYCDEGAEEEDKTGRKEMVLGRNVHTTCLAVTEPEANDEFTGDKEAFMAGVLARYRKTLIERTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSVFKAARMYRMECVKVGTLISGEIDCTDFKAKLSANKEKPAIINVNIGTTVKGAVDNLDLVIQTLEECGFTKDRFYIHCDGALFGLMMPFVKKVPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINALSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYKGFQKEVQKCLRNAHYLKDRLRGAGISAMLNELSSTVVFERPFDEEFVRKWQLACEGNIAHVVVMPNVTIEKLDDFLTDLIEKRSTWYQDEKTKPPCVAEVIGAENCSCLNHK 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1161328 1163120 + BLOR15947 Blo17g00126 72514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00126 476 PANTHER - 5 476 - -
Blo17g00126 476 Gene3D - 117 358 IPR015421 GO:0003824
Blo17g00126 476 Pfam Pyridoxal-dependent decarboxylase conserved domain 186 398 IPR002129 GO:0016830|GO:0019752|GO:0030170
Blo17g00126 476 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 300 321 IPR021115 GO:0016831
Blo17g00126 476 SUPERFAMILY PLP-dependent transferases 96 445 IPR015424 -
Blo17g00126 476 Gene3D Aspartate Aminotransferase, domain 1 359 447 IPR015422 GO:0003824
Blo17g00126 476 PANTHER SERINE DECARBOXYLASE 5 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00126 K25193 SDC; serine decarboxylase [EC:4.1.1.-] - vvi:100258141 824.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00126 Blo18g00139 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00126 Blo-Chr17:1161328 Blo17g00478 Blo-Chr17:6793866 2.73E-06 dispersed
Blo17g00126 Blo-Chr17:1161328 Blo18g00485 Blo-Chr18:5852115 3.94E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
Vvi18g1283 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00126 . . Bda13g01409 . . . Bma02g00148 . . . . . . Car15g00556 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004732 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 3 1 1 2 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00126 Blo_Chr17 FPKM 92.953773 102.45636 72.744843 67.026146 67.84269 69.436676 64.566566 66.119209 72.553596 71.712738