Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00141 ATGCATACGGGGAATACCCATTACTTCCAAAGACAAAGACAAGGGAAGCAGTCGATCGGCTATTGCGTTTCTCTCTGTCTCTCTCTGTCTCTCTCTTTCTGCCTCTTTCTCTCTGGTAAGCCTCTCTATCTCTACGCTTCATTTTTCTCCGTCTTGTTCTGTTTCTTATCTGGACGGGAATCTGCATTTATATTGAGGAGAAAAAATAGGGACTTCAGCTTTCTCGAAATCACCTATGATTCAGCTTTTGTCTTCATTTTTTTCCCTAGGCGATTTCTGAATTCTCAAATTCACTGGCAGTCAATAATGACGGAACCCTCTAAAGTGATTCACGTCCGAAATGTGGGCCATGAAATCTCTGATAATGATCTGCTTCAGCTATTCCAGCCATTTGGGGTTATAACTAAGCTTGTAATGCTTCGAGCAAAAAATCAGGCGCTTATCCAAATGCAAGATATTCCTGCAGCAGTCAATGCTTTACAATTCTACGCAAACGTCCAACCAACCATAAGGGGAAGGAATGTTTATGTTCAGTTCTCATCTCATCAAGAGCTAACTACAATGGAGCAAAATACTCAAGGACGAGGAGATGAGCCAAACCGTATTCTCTTAGTCACAATTCATCATATGCTATATCCAATAACTGTGGAAGTGCTTCATCAAGTTTTTTTTCCCCACGGATTTGTGGAAAAGATAGTTACATTTCAGAAGTCAGCTGGTTTTCAGGCCCTTATTCAGTATCAATCACGCCAAAGTGCAGTGTCCGCTAGAACTGCACTGCAGGGGCGTAATATCTATGATGGTTGCTGTCAATTGGACATTCAATTCTCAAATCTTGATGAGTTGCAAGTAAATTACAACAATGAACGATCTAGGGATTTTACGAACCCCAACTTACCCTCTGAACAAAGAGGCCGATCCTCCCAGCCTGGGTATGGAGATGCAGGAGGCATGTATGCCCTTCAACCATCCGGGCCCAGACCAGGAGGATTTCCACAGATGGCCAATGCTGCTGCAATTGCAGCTGCCTTTGGAGGAGGTTTGCCTCCTGGTGTTAGCGGGACAAATGACAGGTGTACAGTTCTTGTTTCAAATTTCAATCCTGATAGAATAGATGAAGATAAGCTCTTCAACCTGTTCTCCATTTATGGCAACATCGTAAGAATTAAACTCCTCCGAAATAAACCAGATCACGCTCTTGTTCAGATGGGAGATGGCTTCCAGGCTGAATTAGCAGTTCACTTCTTAAAGGGAGCATTATTGTTCGGAAAAAGATTGGAGGTCAACTTCTCCAAATTTCCAAATATCACTCAAGGAGCCGATACACACGAGTATGTAAATTCAAATCTTAACCGCTTCAATCGTAATGCTGCAAAGAACTACCGATACTGCTGTTCCCCGACAAAGATGATCCATATTTCCTCCCTACCCCAAGAAGTCACTGAGGAGGAGATTGTGAACCACCTTGAGGAGCATGGAACCATTGTCAACACCAAGCTATTTGAGATGAATGGGAAGAATCAGGCCTTGGTTATGTTTGAAACCGAAGAGCAGGCCACTGAGGCCCTCGTCTGCAAGCATGCTACCCCAATCGGTGGCTCGATAATGCGGATTTCCTTTTCGCAATTGCAGGGAATCTAA 1641 43.51 MHTGNTHYFQRQRQGKQSIGYCVSLCLSLSLSFCLFLSGKPLYLYASFFSVLFCFLSGRESAFILRRKNRDFSFLEITYDSAFVFIFFPRRFLNSQIHWQSIMTEPSKVIHVRNVGHEISDNDLLQLFQPFGVITKLVMLRAKNQALIQMQDIPAAVNALQFYANVQPTIRGRNVYVQFSSHQELTTMEQNTQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQSRQSAVSARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPSEQRGRSSQPGYGDAGGMYALQPSGPRPGGFPQMANAAAIAAAFGGGLPPGVSGTNDRCTVLVSNFNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLEVNFSKFPNITQGADTHEYVNSNLNRFNRNAAKNYRYCCSPTKMIHISSLPQEVTEEEIVNHLEEHGTIVNTKLFEMNGKNQALVMFETEEQATEALVCKHATPIGGSIMRISFSQLQGI 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1309809 1315616 - BLOR15962 Blo17g00141 72529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00141 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 543 IPR000504 GO:0003723
Blo17g00141 546 MobiDBLite consensus disorder prediction 290 326 - -
Blo17g00141 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 182 IPR000504 GO:0003723
Blo17g00141 546 CDD RRM4_PTBPH3 462 540 - -
Blo17g00141 546 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 103 545 - -
Blo17g00141 546 SMART rrm1_1 360 429 IPR000504 GO:0003723
Blo17g00141 546 SMART rrm1_1 470 539 IPR000504 GO:0003723
Blo17g00141 546 SMART rrm1_1 109 178 IPR000504 GO:0003723
Blo17g00141 546 SMART rrm1_1 204 273 IPR000504 GO:0003723
Blo17g00141 546 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 103 545 - -
Blo17g00141 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 444 - -
Blo17g00141 546 Pfam RRM-like domain 198 277 IPR021790 -
Blo17g00141 546 SUPERFAMILY RNA-binding domain, RBD 98 195 IPR035979 GO:0003676
Blo17g00141 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 433 IPR000504 GO:0003723
Blo17g00141 546 MobiDBLite consensus disorder prediction 290 308 - -
Blo17g00141 546 SUPERFAMILY RNA-binding domain, RBD 199 300 IPR035979 GO:0003676
Blo17g00141 546 Gene3D - 100 200 IPR012677 -
Blo17g00141 546 Gene3D - 453 545 IPR012677 -
Blo17g00141 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 161 IPR000504 GO:0003723
Blo17g00141 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 534 IPR000504 GO:0003723
Blo17g00141 546 Gene3D - 201 304 IPR012677 -
Blo17g00141 546 SUPERFAMILY RNA-binding domain, RBD 357 541 IPR035979 GO:0003676
Blo17g00141 546 Gene3D - 353 450 IPR012677 -
Blo17g00141 546 CDD RRM1_PTBPH3 108 182 IPR034795 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00141 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - jre:108984238 817.764
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00141 Blo18g00151 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00141 Blo-Chr17:1309809 Blo17g00366 Blo-Chr17:3977510 1.81E-06 dispersed
Blo17g00141 Blo-Chr17:1309809 Blo18g00151 Blo-Chr18:1380176 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00141 Blo_Chr17 FPKM 0.0 0.693517 0.567071 0.575007 1.01325 1.237856 1.338087 0.846353 0.615405 0.779274