Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00150 ATGGAGAATGGTTCAGTAGTACAAGGCCCAGCTTCTAGCCCTCTTAGTAAGGTTATTGTCGTTTCTGCCATCGCTGCTGGTGTTCAGTTTGGATGGGCTCTTCAGCTCTCTCTGTTAACTCCTTACGTTCAGCAATTAGGAGTTCCCCATACTTGGGCGGCATTCATCTGGCTATGCGGTCCTATTTCTGGTTTATTGGTTCAGCCAATCGTTGGCTATTATAGTGATCGGTGTACTTCGCGGATAGGCCGTCGCCGTCCTTTCATTATCGGCGGAGCGGTCTTCGTCGCCCTTGCTGTTTTCTTTATTGGCTTCGCGGCAGACATTGGCCATGTTGCCGGCGATGATCTATCGAAGGCCACAAAGCCACGAGCCGTCGCCATTTTCGTCGTCGGTTTTTGGGTGCTCGACGTGGCTAACAACATGTTGCAAGGACCTTGCAGAGCTTTTCTGGCTGATCTTTCCGGTGAGGATCATAGGAAAATGAGCCTCGCTAATGGGTTCTTCTCCTTCTTCATGGCTGTCGGAAATATTCTGGGTTACGCAGCTGGTTCGTACAGCGGCCTCCATAAGTTCCTTTCCTTCACAAAGACAAAAGCCTGCGACGATTACTGTGCAAATCTGAAATCTTGCTTCATCATCGACATCGTCCTCCTCATCACCGTGACAGCCTTTGCCGTTTTAACCGTCAGAGAGATTCCGTTAGAGAAGAAGGAGCACGGCGAGGAATCAGAGCCGTTCTTCCGCCAGCTGTCGACGGCGTTCAAGCAGCTTTCTAGACCCATGTGGATTCTCTTCCTTGTGACTGCTTTGAACTGGATCGCCTGGTTCCCCTTCCTGTTGTTCGACACAGATTGGATGGGTCTGGAAGTGTACGGAGGAAAGCCGAAGGGGACGGCGGAGGAAGTGAAGATTTATGATCTCGGTGTGCGAGCTGGGGCTCTAGGTTTGATGATTAACTCCATTGTTCTGGCCTTTGCATCTCTTGCAGTCGAACCCATTGGTCGTGCGCTGAAGGGCATGAAGAATTGGTGGGCGGTTGTTAACTTTATCCTGGCCATCTCCTTGGGTATGACTGTGGTTGTGACCAAGGTTGCTGAGAAATGGAGGCATGTCAATGGCCTCCACCATCCCCCCTCTGATATTAAAGCCGGAGCGTTGGCCATCTTTGCAATTCTTGGCATTCCTCTTTCAGTGAATTTCAGTGTTCCATGGGCTTTGGCGTCCATCTACTCCGTCACTTGCGGCGCTGGGCAAGGGCTTTCTCTTGGACTGTTGAACTTGGCCATCGTTATCCCACAGATGTTCGTGTCGGTGGTGAGCGGCCCTCTAGACGCAGCCTTCGGTGGCGGCAACTCCCCGGCATTTGTGATGGGCAGCATAGCAGCGGCGGTAAGCGCAATTCTGGCTCTGACGATTCTTCCAAAAACGCCGAGACAAACGAGCTCATTCTTCAGCACGGGAGGACATTAA 1473 51.66 MENGSVVQGPASSPLSKVIVVSAIAAGVQFGWALQLSLLTPYVQQLGVPHTWAAFIWLCGPISGLLVQPIVGYYSDRCTSRIGRRRPFIIGGAVFVALAVFFIGFAADIGHVAGDDLSKATKPRAVAIFVVGFWVLDVANNMLQGPCRAFLADLSGEDHRKMSLANGFFSFFMAVGNILGYAAGSYSGLHKFLSFTKTKACDDYCANLKSCFIIDIVLLITVTAFAVLTVREIPLEKKEHGEESEPFFRQLSTAFKQLSRPMWILFLVTALNWIAWFPFLLFDTDWMGLEVYGGKPKGTAEEVKIYDLGVRAGALGLMINSIVLAFASLAVEPIGRALKGMKNWWAVVNFILAISLGMTVVVTKVAEKWRHVNGLHHPPSDIKAGALAIFAILGIPLSVNFSVPWALASIYSVTCGAGQGLSLGLLNLAIVIPQMFVSVVSGPLDAAFGGGNSPAFVMGSIAAAVSAILALTILPKTPRQTSSFFSTGGH 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1408746 1410465 + BLOR15971 Blo17g00150 72538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00150 490 PANTHER SUGAR TRANSPORTER 11 482 - -
Blo17g00150 490 Pfam MFS/sugar transport protein 31 275 - -
Blo17g00150 490 SUPERFAMILY MFS general substrate transporter 19 480 IPR036259 -
Blo17g00150 490 PANTHER SUCROSE TRANSPORT PROTEIN SUC2-LIKE 11 482 - -
Blo17g00150 490 TIGRFAM GPH_sucrose: sucrose/H+ symporter 14 477 IPR005989 GO:0005887|GO:0008515|GO:0015770
Blo17g00150 490 CDD MFS_SLC45_SUC 19 472 - -
Blo17g00150 490 Gene3D MFS general substrate transporter like domains 15 480 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00150 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:116401998 698.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00422 Blo-Chr1:4767036 Blo17g00150 Blo-Chr17:1408746 7.10E-61 dispersed
Blo17g00150 Blo-Chr17:1408746 Blo01g01786 Blo-Chr1:57590023 5.20E-165 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00150 . 15 489 Sucrose Transporter Gene Family AT1G22710 65.1 6.6e-177 617.5
Blo01g01786 . 28 492 Sucrose Transporter Gene Family AT1G22710 53.2 4.6e-146 515.0
Blo17g00150 . 7 475 Sucrose Transporter Gene Family AT2G14670 62.8 2.2e-169 592.4
Blo01g01786 . 13 492 Sucrose Transporter Gene Family AT2G14670 53.0 1.5e-146 516.5
Blo17g00150 . 7 398 Sucrose Transporter Gene Family AT1G66570 62.2 5.8e-140 494.6
Blo01g01786 . 24 420 Sucrose Transporter Gene Family AT1G66570 53.2 5.4e-122 434.9
Blo01g00422 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 1.0e-184 643.3
Blo17g00150 . 5 475 Sucrose Transporter Gene Family AT5G06170 61.3 9.2e-160 560.5
Blo01g01786 . 27 492 Sucrose Transporter Gene Family AT5G06170 51.3 1.0e-134 477.2
Blo17g00150 . 13 475 Sucrose Transporter Gene Family AT5G43610 62.4 6.6e-166 580.9
Blo01g01786 . 22 492 Sucrose Transporter Gene Family AT5G43610 52.7 1.7e-142 503.1
Blo01g01786 . 14 498 Sucrose Transporter Gene Family AT1G09960 72.8 8.0e-207 716.8
Blo17g00150 . 6 480 Sucrose Transporter Gene Family AT1G09960 52.8 2.5e-136 482.6
Blo17g00150 . 13 489 Sucrose Transporter Gene Family AT1G71880 61.6 1.1e-168 590.1
Blo01g01786 . 27 492 Sucrose Transporter Gene Family AT1G71880 53.1 8.5e-140 494.2
Blo17g00150 . 13 478 Sucrose Transporter Gene Family AT1G71890 60.7 2.4e-163 572.4
Blo01g01786 . 27 492 Sucrose Transporter Gene Family AT1G71890 50.3 6.3e-135 478.0
Blo17g00150 . 13 489 Sucrose Transporter Gene Family AT1G71880 61.6 1.1e-168 590.1
Blo01g01786 . 27 492 Sucrose Transporter Gene Family AT1G71880 53.1 8.5e-140 494.2
Blo17g00150 . 15 489 Sucrose Transporter Gene Family AT1G22710 65.1 6.6e-177 617.5
Blo01g01786 . 28 492 Sucrose Transporter Gene Family AT1G22710 53.2 4.6e-146 515.0
Blo01g00422 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.6 1.0e-184 643.3
Blo01g01786 . 14 498 Sucrose Transporter Gene Family AT1G09960 72.8 8.0e-207 716.8
Blo17g00150 . 6 480 Sucrose Transporter Gene Family AT1G09960 52.8 2.5e-136 482.6
Blo17g00150 . 13 478 Sucrose Transporter Gene Family AT1G71890 60.7 2.4e-163 572.4
Blo01g01786 . 27 492 Sucrose Transporter Gene Family AT1G71890 50.3 6.3e-135 478.0
Blo17g00150 . 13 475 Sucrose Transporter Gene Family AT5G43610 62.4 6.6e-166 580.9
Blo01g01786 . 22 492 Sucrose Transporter Gene Family AT5G43610 52.7 1.7e-142 503.1
Blo17g00150 . 7 398 Sucrose Transporter Gene Family AT1G66570 62.2 5.8e-140 494.6
Blo01g01786 . 24 420 Sucrose Transporter Gene Family AT1G66570 53.2 5.4e-122 434.9
Blo17g00150 . 7 475 Sucrose Transporter Gene Family AT2G14670 62.8 2.2e-169 592.4
Blo01g01786 . 13 492 Sucrose Transporter Gene Family AT2G14670 53.0 1.5e-146 516.5
Blo17g00150 . 5 475 Sucrose Transporter Gene Family AT5G06170 61.3 9.2e-160 560.5
Blo01g01786 . 27 492 Sucrose Transporter Gene Family AT5G06170 51.3 1.0e-134 477.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00150 Blo_Chr17 FPKM 7.160574 6.808761 13.591383 13.551133 12.867352 12.172693 14.430732 21.198515 19.624584 20.334032