Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00151 ATGTTTGAGGGGAGCATCCCATTTCGCTCACCCGTTTGTCCGTCCCCGGCTTCGGACCCTCCCTTCTCACTTCCGGCGAAGGCTCCGCGAAACAAGCCAGGATTGAGGATAAAACCGATTTATTGGAAGAATATAACGTCGAAGCTTAGTTCTGTTGCAGTTCCTTCAAATTCTACCTCTGGGGCTCTCAATCAAACAGTTGGTGGACAGTGGGTGCGAACCGTTGACGAGAATGAGTCGAGAAAGAAACGGGTGTTTTTCTTGGATGTAAATCCACTCTGCTACGCCGGTAGTAGACCTAGCTTAAGCTCGTTTATTCATTGGGTCTCCCTCTTCTTCTGTCAAGTGAGCCGTACGGACCCTGTAATTGCGGTTCTTGATGGGGAAGGGGGTAATGAGTATCGAAGGCAAATACTACCTTCATATAAAGCACATAGAAGTAAATTCTCAAGACATCCATCAACTTCAATCAGACCTTCACATGGTGTTTTTAGGAATTCACATCGAGTTATAATTAATGTTCTCCAAGAATGCAATGTGCCAGTCGTAAAAATTGAAGGTCATGAAGCCGATGATGTTGTTGCGACACTTGTGGAACAAGTTTTGGATAGAGGATACAGAGTGGTGATTGGATCTCCAGATAAAGATTTTAAGCAACTCATTTCAGAAGATGTTCAAATTGTTATGCCTTTGGGTGACCTAAACAGATGGTCTTTTTACACCTTAAAGCACTACCTGGCTCAGTACAAGTGTGATCCGCGCTCTGACTTGAGCCTTAGATGCATACTCGGTGACGAGGTTGACGGTGTTCCTGGAATTCAGCACGTTGCTCCTGGGTTTGGGCGAAAAACTGCCGTAAAGCTTTTACAGAAGCATGGTTCATTGGAAAATTTACTGAAGACTGCTGCCGTAAGAACTGTTGGACGACAATATGCACAAGATGCTCTTGTAAAGTACGCCGACTATCTTCGGAGAAACCAGAAAGTACTTGCTCTAAGAAGGGATCTTGACGTCCAACTTCAAGAGCAATGGTTGGGCGAGAGAGACACGAGCAATGACTCGATCATTCTCTCAAACTTCTCGAAATCGTTGAAATGA 1098 44.81 MFEGSIPFRSPVCPSPASDPPFSLPAKAPRNKPGLRIKPIYWKNITSKLSSVAVPSNSTSGALNQTVGGQWVRTVDENESRKKRVFFLDVNPLCYAGSRPSLSSFIHWVSLFFCQVSRTDPVIAVLDGEGGNEYRRQILPSYKAHRSKFSRHPSTSIRPSHGVFRNSHRVIINVLQECNVPVVKIEGHEADDVVATLVEQVLDRGYRVVIGSPDKDFKQLISEDVQIVMPLGDLNRWSFYTLKHYLAQYKCDPRSDLSLRCILGDEVDGVPGIQHVAPGFGRKTAVKLLQKHGSLENLLKTAAVRTVGRQYAQDALVKYADYLRRNQKVLALRRDLDVQLQEQWLGERDTSNDSIILSNFSKSLK 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1411327 1414819 - BLOR15972 Blo17g00151 72539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00151 365 MobiDBLite consensus disorder prediction 1 30 - -
Blo17g00151 365 Pfam 5'-3' exonuclease, C-terminal SAM fold 258 341 IPR020045 GO:0003677|GO:0003824
Blo17g00151 365 MobiDBLite consensus disorder prediction 13 27 - -
Blo17g00151 365 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 109 229 IPR020046 GO:0003677
Blo17g00151 365 PANTHER DNA POLYMERASE I 15 364 IPR002298 GO:0003887|GO:0006261
Blo17g00151 365 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 258 351 IPR036279 -
Blo17g00151 365 SMART 53exo3 83 348 IPR002421 GO:0003677
Blo17g00151 365 CDD H3TH_53EXO 262 332 IPR020045 GO:0003677|GO:0003824
Blo17g00151 365 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 15 364 - -
Blo17g00151 365 SUPERFAMILY PIN domain-like 83 249 IPR029060 -
Blo17g00151 365 Gene3D - 249 330 - -
Blo17g00151 365 Gene3D - 74 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00151 - - - csin:114266020 458.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00513 Blo-Chr5:9024618 Blo17g00151 Blo-Chr17:1411327 2.85E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1397 . . . . . . . . . . . . . . Sed03g3083 . . Bhi04g02527 Tan11g0060 Cmetu03g2067 . Hepe02g3457 . Lcy10g2348 . . . . . . . . . . . . . . . Blo17g00151 . . Bda13g01440 . Bpe14g00416 . Bma02g00184 . . . . . . . . . . . . . . . . Cla11g00787 Cam11g0821 Cec11g0801 Cco11g0806 Clacu11g1037 Cmu11g0898 Cre11g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011265 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31