Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00155 ATGCAGAGGGCGGGGGTGGTGGTTGTAGTAGTAGTTGTGGTTCTGTCAATCTTAGAATTGACCACACGTTCTTCTTCTTCGTCCTTGGATGGGGAACGGATTTTCACGGCGAACGGGAAGGTGTTGGAGCTTGATGATTCCAATTTTGATTCCGCTATTTCATCTTTTGATTTCATCTTGGTCGACTTCTATGCTCCCTGGTGTGGCCACTGCAAGCGTCTTTCTCCGCAGTTAGATGCTGCTGCTCCGTTGCTCGCCGGCTTGAAGGAACCCATAGTGATTGCAAAAGTAAATGCAGACAAGTTTAAGGGTCTTGGAAAGACATATGACGTTGATGCATATCCTACTTTGAAGATCTTTGTGCATGGAGTCCCTAATGACTATCATGGGCCAAGAAAACCAGATTTACTTGTGAGATACCTGAAGAAATTTGTTGCTCCTGATGTTTCCATTCTTGATTCATACTCTGCTATCAAGGACTTTATCGAAACATCTGGCACTTTTTTTCCCACCTTCATCGGTTTTGGCTTGAGTGAGTCGATTATCTCAGAGTTAGCCATCAAATACAAGAAAAAGGCATGGTTTTCTGTGGCTAAAGATTTCTCCGAGGATGTTATGATCTCGTACAATTTTGTAAAAGTTCCTGCATTAGTAGCTATTCATCCTGCCTACGACAATGAGCAGAACATTTTTTATGGTCCCTTTGAAGATCGATTCTTGGAAGAGTTTATCAAACAAAGTTTTCTCCCTCTTGTTGTACCAATAAATCAAGACACTCTAAAGCTATTGAAAGATGAACAAAGGAAAATTGTTCTTGCGCTTGTAGAAGACGAGGACGAAGATAAGACAAAAAATCTGGTTAAGCTACTAAAGGCTGGTGCATCTGATAATCGTGACTTGATATTTGGGTACGTCGGGATCAAGCAGTGGGCAGAGTTTGCTGAAACATTCGTTGCTGATAAGAAGACAGCACTACCAAAATTGGTTGTTTGGGATGGCAACGAGGAATATTTATCGGTTATTGGCTGCGAAACCATTAGAGAGGATGACGCGACCCAGGTCTCGAAGTTCCTCGAAGGATACAGGGAAGGAAGAATTGTAGAAAATAGAATTGCTGGTCCATCATATCTCGGCTACATCATTGGGATTGGGGCTGTGTATATTATTGTCTTAATTTTTGGAATTTTGATGGTAGCAAGGATGATCAATCGTCGGGATGAGCCTCAAGTAGGTACAGAACCTGTTGATCCTGCCAGTGGTTCTCTTTCTGAGGTTAGGAACAGCGATTACAATAGAACTGGAGAGAAGGAAGATTAA 1317 42.22 MQRAGVVVVVVVVVLSILELTTRSSSSSLDGERIFTANGKVLELDDSNFDSAISSFDFILVDFYAPWCGHCKRLSPQLDAAAPLLAGLKEPIVIAKVNADKFKGLGKTYDVDAYPTLKIFVHGVPNDYHGPRKPDLLVRYLKKFVAPDVSILDSYSAIKDFIETSGTFFPTFIGFGLSESIISELAIKYKKKAWFSVAKDFSEDVMISYNFVKVPALVAIHPAYDNEQNIFYGPFEDRFLEEFIKQSFLPLVVPINQDTLKLLKDEQRKIVLALVEDEDEDKTKNLVKLLKAGASDNRDLIFGYVGIKQWAEFAETFVADKKTALPKLVVWDGNEEYLSVIGCETIREDDATQVSKFLEGYREGRIVENRIAGPSYLGYIIGIGAVYIIVLIFGILMVARMINRRDEPQVGTEPVDPASGSLSEVRNSDYNRTGEKED 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1451870 1455510 - BLOR15976 Blo17g00155 72543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00155 438 ProSitePatterns Thioredoxin family active site. 60 78 IPR017937 -
Blo17g00155 438 Gene3D Glutaredoxin 25 153 - -
Blo17g00155 438 PRINTS Thioredoxin family signature 67 76 - -
Blo17g00155 438 PRINTS Thioredoxin family signature 59 67 - -
Blo17g00155 438 PRINTS Thioredoxin family signature 110 121 - -
Blo17g00155 438 PANTHER PROTEIN DISULFIDE ISOMERASE 12 438 - -
Blo17g00155 438 SUPERFAMILY Thioredoxin-like 35 144 IPR036249 -
Blo17g00155 438 MobiDBLite consensus disorder prediction 408 438 - -
Blo17g00155 438 CDD PDI_a_family 42 141 - -
Blo17g00155 438 Pfam Thioredoxin 41 142 IPR013766 -
Blo17g00155 438 Pfam Thioredoxin-like domain 186 336 - -
Blo17g00155 438 ProSiteProfiles Thioredoxin domain profile. 18 146 IPR013766 -
Blo17g00155 438 Gene3D Glutaredoxin 237 370 - -
Blo17g00155 438 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 12 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00155 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - jre:109011811 560.836
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00155 Blo18g00166 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00155 Blo-Chr17:1451870 Blo17g00175 Blo-Chr17:1771070 2.06E-10 dispersed
Blo17g00155 Blo-Chr17:1451870 Blo18g00166 Blo-Chr18:1561359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1206 . . . . . . . Blo17g00155 Blo18g00166 . Bda13g01447 . Bpe14g00408 . Bma02g00190 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006012 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00155 Blo_Chr17 FPKM 14.427664 15.712265 11.899917 13.1914 15.750568 16.631361 15.537384 12.429564 10.94091 10.863949