Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00156 ATGGGAGTATCCTTTGCCTTCAAAACGGTTCTAAAGCTTCAACCTTTCTTTCGCCCGCGCCTCTGCAACAGCTTCTCACGCAAGTTTCCGACTTTTTTCGAGGCACCCAAAACCGTAGCTGGGGCCAGAAGCTCGGGGATTTTGCGTTGTAGAACAATGGCGGTTTCTCAGCTTCCGGTCGTCCAAGTGAAAGAGAATATCGAACTGACTGAAATCGAGGGGAAGATTTTCGACAGACTTCTTGCCACTCTTCGTCACTTTGGCCTCCCTTATGAGCTCCGAGTGGCCGGCGGTTGGGTTCGCGACAAGCTTCTTGGAAAAGATTGCTATGATATTGATATTGCTCTAGACAATATGTTGGGCAGCGAATTCGTTGAAAAGGTCAGGGAATTCTTGTTGTCCGTGGGAGAAGAGGCTCAAGGGATCGCAATTATTCCCAGTAATCCTGAGCAGTCAAAACATTTAGAGACAGCAAGGATGCGCATTTTTGATGTATGGATTGATTTTGTGAACTTGCGGAGCGAAGAGTACAGTAATAATAGCCGTATTCCAACTAAACAAAAATTTGGGACGGCCAAAGAGGATGCCTATAGAAGGGATTTAACAATCAACAGCTTGTTCTACAATATTAATACCGGCTTAGTTGAAGACTTCACTGAAAGAGGAATTTCAGATCTGAAATTCGGTAAAATTGTAACTCCGTTACCTCCAAAAGAAACGTTTTTAGATGATCCACTCCGAGTTCTTCGAGCCATCCGCTTTGGTGCGAGATTCGGATTTACACTAGATGAAGGATTAAAAGAAGCTGCTTCATGCGATGACGTAAAAAATGCCCTCACTGAAAAAATTAGCAGAGAGCGAATTGGAACCGAAATTAATCTTATGATAGCTGGGAACCAACCAGTTGATGCGATGAGACACGTCGATCATTTGACGTTATTTTGGGTCATTTTCGGCGTACCTCCTAATATTGAGCCTGCAGTATTAGAGAGATGTGATGGGCTTTGCGTTGCTTGCTTGGATGCTGCGTGGAAGCTCATTCCATTAATCGGAATATCTATCTTCGATAACGAACAGAGAAGGCTCTGTTTATATTCGGCTTTATTTCTCCCATTCAGAAAGACCAGTTATAAAGATCACAAATCCAAAAAGATATCCGTCGTATACTACATTTTCAAGAATTCCCTCAAGCTGAAAGTCAGCGATGCGGAAACTGTTGTTAATGTACACCGGGCATTGGAGAAGTTCTTGTCTTTGATTCCTCGTCTTACATCTAACGAAGAAAATCAACTTACCGAAGATGACACGGAGAAAGAATATGTAGATATCCCTCTCTCCTCGAGGCTTCGAGTATCGACTGGATTCCTTTTGCGTGAAATCAAGGACTTTTGGCGAGTGGCCTTGTGCATTTCTACGTTGTTATATCCCGCCAACATCGATCACACTGAAGACTTCTCAAATGGGCGCTTTGAATTGGAGTGGCGAAGTCGTTTATTTTGTAGTGTTGAGAACGCAATTATGAAATTAGGTCTTGATAAAATTTGGGAAGTGAAACCTGTGATAGATGGGAGGGAGATAATGAATATTTTACAGCTTAAATGTGGAGGACCAGTTGTTAATGAATGGAAACAAAAGGTGATGGCGTGGCAGCTTGCGCATCCTTCAGGAACTGCAGAAGAATGCGTTGATTGGATGAAGCAAACCAACTCAAAACGCCTAAAAATGGAGTGCAGCTAA 1737 43.01 MGVSFAFKTVLKLQPFFRPRLCNSFSRKFPTFFEAPKTVAGARSSGILRCRTMAVSQLPVVQVKENIELTEIEGKIFDRLLATLRHFGLPYELRVAGGWVRDKLLGKDCYDIDIALDNMLGSEFVEKVREFLLSVGEEAQGIAIIPSNPEQSKHLETARMRIFDVWIDFVNLRSEEYSNNSRIPTKQKFGTAKEDAYRRDLTINSLFYNINTGLVEDFTERGISDLKFGKIVTPLPPKETFLDDPLRVLRAIRFGARFGFTLDEGLKEAASCDDVKNALTEKISRERIGTEINLMIAGNQPVDAMRHVDHLTLFWVIFGVPPNIEPAVLERCDGLCVACLDAAWKLIPLIGISIFDNEQRRLCLYSALFLPFRKTSYKDHKSKKISVVYYIFKNSLKLKVSDAETVVNVHRALEKFLSLIPRLTSNEENQLTEDDTEKEYVDIPLSSRLRVSTGFLLREIKDFWRVALCISTLLYPANIDHTEDFSNGRFELEWRSRLFCSVENAIMKLGLDKIWEVKPVIDGREIMNILQLKCGGPVVNEWKQKVMAWQLAHPSGTAEECVDWMKQTNSKRLKMECS 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1456830 1462295 - BLOR15977 Blo17g00156 72544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00156 578 SUPERFAMILY Nucleotidyltransferase 72 227 IPR043519 -
Blo17g00156 578 Gene3D Beta Polymerase, domain 2 60 227 IPR043519 -
Blo17g00156 578 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 54 576 - -
Blo17g00156 578 CDD NT_ClassII-CCAase 79 227 IPR002646 GO:0003723|GO:0006396|GO:0016779
Blo17g00156 578 SUPERFAMILY Poly A polymerase C-terminal region-like 231 567 - -
Blo17g00156 578 Gene3D - 230 555 - -
Blo17g00156 578 Pfam Poly A polymerase head domain 93 231 IPR002646 GO:0003723|GO:0006396|GO:0016779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00156 - - - tcc:18592966 768.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00104 Blo-Chr16:2438657 Blo17g00156 Blo-Chr17:1456830 2.88E-07 dispersed
Blo17g00156 Blo-Chr17:1456830 Blo06g01156 Blo-Chr6:34967385 4.77E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1474 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00156 . . Bda13g01449 . Bpe14g00407 . Bma02g00192 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010577 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00156 Blo_Chr17 FPKM 3.041667 4.131773 0.167024 0.158044 0.464476 0.20494 0.0 1.811078 2.032003 1.803764