Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00161 ATGGGAGTAGCAGAGAAGCTTCTGCAACTGGCGCATATCGCCATTCTTCTGCCTGCACTTCTGGCAATTAATCAGTTGCCTGGTTGCCCCAACGAGTGCGGGGATTTATCAGACATTCCCTACCCTTTTGGAATCGGAGAAAACTGTTCTCTAAATCTAAACTTCTCAATCGAATGCAATCAAACCTATGATCCTCCACGAGCTTTCTGGAAAAGCACTTCTTCGAATCTTTTCATCAATAATATTTCCCTGGATGATAGTGAGGCTGAGGTCATGCTCTTCGTAGCCAGTGATTGCTATGGAGAAGATGGGCAGCTGTTAAACGCATTGACTTTTTTACTCTCCCTGACCAGTCCGTTCGCCATCTCCGAGGTCAAGAACAAGTTCACGGTCATAGGGTGCGATTCTTACGCTTTCATCACCGGCACAGATTACTCCTTGGGCTGCTTGTCTATATGTTCTAACAACGAGACATTGGAAGATGGGTCGTGTTCAGGAATCGGGTGTTGCCAAGTGAATATTCCTCAGGGTTTGGAGGACATAAGTTTGAAAGTGGAAAGCTTTAATAATCACGCTAATATTACTTATTTTAATCCGTGTGGATATGCTTTTCTGGTGGAGGATCAGAAGTTTAGTTTTCGTAAGAGTTACCTGAGTAATTTTTTGGAGACCACGATGCCGGTGGTGCTCAATTGGGACATAAAGAACGATACTTGTCTATCGGCGGTCAACAAGACGAGTTGCCTCTGTGGAGGAAACACCACCCTCATACCCATCGCAGGTGAAGGATCGGACTATCAGTGCAAGTGCTGGGATGGCTACGAGGGAAATCCTTATCTTCCTCTGGGTTGCCAAGATATTGATGAGTGTAAAAATAGTAGCACGAACGAGTGCATGGGCAAGTGCATAAACACACTTGGAAATTATACTTGTCCATGCCCAAAGGGATACCAAGGAGATGCAAGGACTGGTGGAGAAGGCTGCAACCCCAAACCTTCTTTTCTGATTCAGATCATAGTTGGTAAAGCCATTTACTTCTTCATCTTCTTCATTTTTCCTCGATTTCAGTTCTATAGTCCTGTAAATTTCATGTTCTTACATAATTAG 1107 44.08 MGVAEKLLQLAHIAILLPALLAINQLPGCPNECGDLSDIPYPFGIGENCSLNLNFSIECNQTYDPPRAFWKSTSSNLFINNISLDDSEAEVMLFVASDCYGEDGQLLNALTFLLSLTSPFAISEVKNKFTVIGCDSYAFITGTDYSLGCLSICSNNETLEDGSCSGIGCCQVNIPQGLEDISLKVESFNNHANITYFNPCGYAFLVEDQKFSFRKSYLSNFLETTMPVVLNWDIKNDTCLSAVNKTSCLCGGNTTLIPIAGEGSDYQCKCWDGYEGNPYLPLGCQDIDECKNSSTNECMGKCINTLGNYTCPCPKGYQGDARTGGEGCNPKPSFLIQIIVGKAIYFFIFFIFPRFQFYSPVNFMFLHN 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1487430 1488767 + BLOR15982 Blo17g00161 72549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00161 368 CDD EGF_CA 286 320 - -
Blo17g00161 368 Pfam Wall-associated kinase 162 249 IPR013695 GO:0004674|GO:0016021
Blo17g00161 368 PANTHER OSJNBA0016N04.9 PROTEIN 19 295 - -
Blo17g00161 368 ProSitePatterns Calcium-binding EGF-like domain signature. 286 311 IPR018097 GO:0005509
Blo17g00161 368 Pfam Calcium-binding EGF domain 286 324 IPR001881 GO:0005509
Blo17g00161 368 SMART egf_5 238 285 IPR000742 -
Blo17g00161 368 SMART egf_5 289 329 IPR000742 -
Blo17g00161 368 ProSiteProfiles EGF-like domain profile. 286 323 IPR000742 -
Blo17g00161 368 Gene3D Plasmodium vivax P25 domain 229 330 - -
Blo17g00161 368 SUPERFAMILY EGF/Laminin 285 321 - -
Blo17g00161 368 SMART egfca_6 286 329 IPR001881 GO:0005509
Blo17g00161 368 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 302 313 IPR000152 -
Blo17g00161 368 PANTHER OSJNBA0016N04.9 PROTEIN 19 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00161 - - - cmos:111461403 344.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00161 Blo-Chr17:1487430 Blo02g00404 Blo-Chr2:5018484 1.11E-33 dispersed
Blo17g00161 Blo-Chr17:1487430 Blo17g00163 Blo-Chr17:1521023 5.48E-63 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g194 . . . . . . . . Cmo04g02520 . Cma01g01027 . . . . . . Bhi04g01849 . . . . . Lcy10g1283 Cla08g00643 . . . . . . . Cone7ag1496 . . . . . Cme03g00456 Blo17g00161 . . . . Bpe14g00403 . Bma02g00195 . . . . . . . . Cpe02g00871 . . . . . . . . . . . . . . Lsi08g00497 . Chy03g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00161 Blo_Chr17 FPKM 2.547159 2.774446 2.74327 2.686106 3.655481 3.912379 3.374952 2.693229 1.885137 1.768332