Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00166 ATGAAATTGTTCGAACATGGCATCCTCGGAGAACCAGAGACTGTCCGCTCCCGTGGCCGCAGTGTGGTGGTAGGCATGAAGCTTGACTCACATAGCAGAGAGCTGCTAACTTGGGCTTTGGTGAAAGTAGCTAAGCCTGGTGACGTTGTGATTGCTCTTCATGTTCTCGGCACCGACGAGACCATCGATCGGAATGGCAAGTCCTCGCTTCTTTCTATTGCCAAAGCGTTCGACTCTGTTCTTGCCGTCTACGAAGGTTTCTGCAATTTGAGACAGGTGAATCTCAAGCTTAAGATATGCAAAGGTCAATCAGCTCGGAAAATTATAGTCAGGGAAGCAAATTCTTGTAAGGCTACCAATGTGATAGTCGGGACTTCTCGTAATCACCCTAGAATTCGGTCGTCCACCTTGGTTGCCAAGTACTGTGCCAATAAACTTTCTAAGGATTGTTTGGTTCTGGCTATAAACAATGGGAAAGTTGTTTTCCAAAAAGAAGCCTCTACAGGAAATATCCATGGCTTCCAAGGAATTGAAGAGTTTCGTGGAAATGGTTTACTTGGTTCGCTTCACTGGTCATTGAGTAAGAGTTCCAGAGTATTAAATGATGGTAATAATGCCATTGTTTGCGTAAAGGGTTGTAATGATCTTCACAGTAAGAGCCTGATTGTTAAACAAAACTGTAGAATTTGTTCTCAATCTTCTCCTTCGCCAAGAAAGACTATCAGTTATGGTGGAGAACACGACGACTCTTTTGCCATGGTACCAGTTCAGAAACTGAAAGCAGAAGAGGCACGAACTTCTATCAGGATGTTGGTTAAAGACTTACCTGAACTGAAACCTGGTTGGCCGTTGCTTCGGCATTCTGATCAATCTCTGGACCGGAATGTTTCCAGTGTTCGGACAATGTCTGTTGTTCAGTGGGCTATGAAGTTACCTACGAGGGGTCCTTACAGAGCAATTTTGAATCAGAACCAGACTCACTCTGATTTGCTTCTGAAACTGGATAGAAGAAGTAGAGTCGTTGTGCCTGTTGATCCTGAACTAGTGTCTTCTCCACCTTTTCCTGATCATACCAAAAAATTCTTACCTAAAGAATTGGAGGATCTTCATGAGAAGCATTCGTCGACTTGCCGATTGTTTAAGTACCAGGAACTTGTCCAAGCAACTTCTGATTTCTCGGCTGATAATTTGATTGGGAAAGGAGGTAGCAGCCAAGTTTACAGAGGCTGTCTTCCAGATGGGAAGGAATTAGCTGTGAAGATCTTAAATCCATCTGAAGATGTCCAAAAGGAGTTTGTTTTAGAAATAGAAATCATGACTGCTTTGAATCACAGGAACATTACTTCCCTTCTGGGATTCTGCTTCGAAGCCAACAATCTCTTGCTGGTGTATAATTTTTTATCGAGAGGGAGTCTCGAAGAGAACCTCCATGGAAATAAGAAGGATCCAACTGCATTTGGTTGGAGTGAAAGATCCAAGGTTGCTGTCGGTGTGGCTGAGGCCTTAAATTATCTCCACGACGACAGCACTCAACCTGTGATTCACAGGGATGTAAAATCTTCAAATGTACTGTTATCTGATGATTTTGAGCCACAGCTTTCAGATTTCGGACTGTCTAAATTTGCACCAGCTTCCTCTGCGCATATAATTTGCACGGATGTTGCTGGGACTTTTGGTTACTTGGCCCCAGAATACTTTATGTATGGAAAAGTAAACGATAAAGTTGATGTCTATGCTTTTGGAGTAGTACTCCTTGAGCTTCTGTCTGGGAGAAAACCTATCTGCAATGAGTCTCCTAAAGGCCAAGAGAGCCTAGTTATGTGGGCAAGGCCAATTCTCAATGGTGGAAAGGTGCATCAATTGCTTGACCCACGATTGGGGGGTAACTATGATGAGGATCAGATGGAGAGGCTAATTTTAGCAGCCAGTCTTTGTATCAGGCGCGCTCCTCGAGCTAGGCCTCGAATGAACTTGGTTTTGAAGCTCCTTCAAGGCGATGAAGAAGTAACCAAGTGGGCAAGGCTTCAAGTTAACGCGGTAGAGGAATCCGAAATGCTCGACGACGAAACATCCCCACGGTCTCATCTCCAATCGCATCTCAACCTTGCACTGCTCGATGTGGAGGACGACTCACTCTCCCTGAGCAGCATTGAGCAAGCAATCTCGCTAGAAGACTACCTGAGGGGAAGATGGAGCCGTTCGTCGAGCTTCGACTAA 2217 44.65 MKLFEHGILGEPETVRSRGRSVVVGMKLDSHSRELLTWALVKVAKPGDVVIALHVLGTDETIDRNGKSSLLSIAKAFDSVLAVYEGFCNLRQVNLKLKICKGQSARKIIVREANSCKATNVIVGTSRNHPRIRSSTLVAKYCANKLSKDCLVLAINNGKVVFQKEASTGNIHGFQGIEEFRGNGLLGSLHWSLSKSSRVLNDGNNAIVCVKGCNDLHSKSLIVKQNCRICSQSSPSPRKTISYGGEHDDSFAMVPVQKLKAEEARTSIRMLVKDLPELKPGWPLLRHSDQSLDRNVSSVRTMSVVQWAMKLPTRGPYRAILNQNQTHSDLLLKLDRRSRVVVPVDPELVSSPPFPDHTKKFLPKELEDLHEKHSSTCRLFKYQELVQATSDFSADNLIGKGGSSQVYRGCLPDGKELAVKILNPSEDVQKEFVLEIEIMTALNHRNITSLLGFCFEANNLLLVYNFLSRGSLEENLHGNKKDPTAFGWSERSKVAVGVAEALNYLHDDSTQPVIHRDVKSSNVLLSDDFEPQLSDFGLSKFAPASSAHIICTDVAGTFGYLAPEYFMYGKVNDKVDVYAFGVVLLELLSGRKPICNESPKGQESLVMWARPILNGGKVHQLLDPRLGGNYDEDQMERLILAASLCIRRAPRARPRMNLVLKLLQGDEEVTKWARLQVNAVEESEMLDDETSPRSHLQSHLNLALLDVEDDSLSLSSIEQAISLEDYLRGRWSRSSSFD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1676419 1679603 - BLOR15987 Blo17g00166 72554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00166 738 CDD USP_Like 22 152 - -
Blo17g00166 738 SUPERFAMILY Protein kinase-like (PK-like) 373 663 IPR011009 -
Blo17g00166 738 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Blo17g00166 738 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 151 - -
Blo17g00166 738 Pfam Universal stress protein family 20 152 IPR006016 -
Blo17g00166 738 Gene3D HUPs 19 156 IPR014729 -
Blo17g00166 738 PANTHER - 13 721 - -
Blo17g00166 738 Pfam Protein kinase domain 394 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00166 738 Gene3D Transferase(Phosphotransferase) domain 1 467 682 - -
Blo17g00166 738 Gene3D Phosphorylase Kinase; domain 1 357 466 - -
Blo17g00166 738 ProSiteProfiles Protein kinase domain profile. 392 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00166 738 SMART serkin_6 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00166 738 PANTHER OS08G0249100 PROTEIN 13 721 - -
Blo17g00166 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00166 - - - jre:109004828 951.044
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00166 Blo18g00172 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo16g00554 Blo-Chr16:22812215 Blo17g00166 Blo-Chr17:1676419 0 dispersed
Blo17g00166 Blo-Chr17:1676419 Blo02g00798 Blo-Chr2:27198106 5.63E-81 dispersed
Blo17g00452 Blo-Chr17:5700156 Blo17g00166 Blo-Chr17:1676419 3.19E-74 dispersed
Blo01g00654 Blo-Chr1:7413189 Blo17g00166 Blo-Chr17:1676419 1.65E-07 transposed
Blo03g00372 Blo-Chr3:8528903 Blo17g00166 Blo-Chr17:1676419 2.95E-42 transposed
Blo10g00038 Blo-Chr10:328498 Blo17g00166 Blo-Chr17:1676419 2.46E-71 transposed
Blo14g00664 Blo-Chr14:14339869 Blo17g00166 Blo-Chr17:1676419 3.40E-87 transposed
Blo15g00380 Blo-Chr15:5291273 Blo17g00166 Blo-Chr17:1676419 5.04E-164 transposed
Blo15g00396 Blo-Chr15:5541042 Blo17g00166 Blo-Chr17:1676419 5.50E-08 transposed
Blo06g00448 Blo-Chr6:25501975 Blo17g00166 Blo-Chr17:1676419 1.89E-153 transposed
Blo17g00166 Blo-Chr17:1676419 Blo18g00172 Blo-Chr18:1660993 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84784 PF00069 Pkinase 1.30E-42 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00166 Blo_Chr17 FPKM 0.516981 0.471923 11.653101 11.37364 0.376256 0.210137 0.407765 0.0 0.0 0.102581