Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00175 ATGGCGTCTCTGTCTTCGTTTTTCTGTTTTCTTATTGCTTCTTCTCTCTTGGCTTCGTCTTTCTCCGCCATCTTCGCTCTAGATTCTGAGTCTGAGGCAGAGTCTAAGGAGTTTGTGCTCTCTTTGGACCACTCTAACTTCTCCGACACCGTCGGCAAGCACGATTTCATCGTCGTCGAGTTCTTCGCCCCCTGGTGTGGACACTGTAAGAATCTTGCACCAGAGTATGAAAAGGCAGCATCTATCTTGAGCAGTCACGACCCTCCAGTAATTTTAGCCAAAGTTGACGCCAGTGATGAAGCAAACAGTGATCTGGCAAATGAGTTAGAAATCAGTGGTCTCCCCACTATTAAGATTTTGAAAAATGGGGGCAAGATCATTCAAGATTATAAGGGTCCTCACGAGGCTGATGGGATTGTTTCCAATTTGAAGAAACAAATTGGACCTGCTTCGGTTGAAGTTAAATCAACAGAAAATGCTACTAATCTTATTGGTGACGATGGGAAGATAGTAATTGTCGGCATTTTCCTACAATTTTCAGGAGAGGAGTTCGAAAATTATACAGCTCTGGCCGAGAAGCTCCGTTCCGACTATGATTTTGGCCATACTTTGGATGCCAAGGTCCTCCCGCGCGGAGAAGCATCCGTCACAGGTCCCATAGTTAGGATATTCAAGCCGTTTGATGAGCTTTTTGTTGATTTTGAGGATTTTGATATGGACGCCATAGAGAAGTTCATCGAAGAGTCAAACGTGCCGGTTGTGACTGTCTTCAATAACGACAAGACCAAACACCGATATGTTATGAAATTCTTCGAGAATGAAAAGGATGACAAAGCTATGCTGTTTTATAACTTCAGCACTGAGCTTGCTCTGTCTTTTGAATCTAATTTTCGCAAACTTGCCAAAGAATATAAAGGAAAGAGCATACACTTTCTGATTGGAGATGTCGACCCCAGCGAAGGTGCACTTCAGTACTTTGGAGTTAGAGATGATCAAGTGCCTGCAGTTGTCATTCATACTAATTCGGGACCGAAATATATGAAGCCCAATGTCGACCCTGATCAGATTGCTCCATGGTTTAAACAATATGAGGCTGGAAACGTGCTGCCGTATATGAAATCAGAGCCTATCCCAGAAAAAAACGATGAGCCTGTGAAAGTGGTCGTTCACGACAGCATCCAGGACATAGTTTTCAACTCCGGAAAGAATGTTCTTCTCAAATTCTACGCACCATGGTGTGGACACTGCAAAAGTCTAGCTCCCATCATCGAGGAAGTTGCTATCGCGTATGAAACCGATCCGGATGTCATCGTTGCCAAGCTTGATGCTACCAGCAATGACTTCCCAACCGAGACATTCGATGTTAACGGCTATCCTACCTTGTACCTGGTATCAGCGAGTGGGAAAGTGTCGGAATTCGATGGAGAAAGAACCAAAGAAGCTATCGTGGATTTCATCGAAAAGAATCGAGATGTAATTGCCGGGAAAGATTCAAACAGAGAAAAAGAACAGATCGATGATGCGAAGAACAAACAGATTGATTTCGAAGCAAAGGACGAGCTCTGA 1566 43.93 MASLSSFFCFLIASSLLASSFSAIFALDSESEAESKEFVLSLDHSNFSDTVGKHDFIVVEFFAPWCGHCKNLAPEYEKAASILSSHDPPVILAKVDASDEANSDLANELEISGLPTIKILKNGGKIIQDYKGPHEADGIVSNLKKQIGPASVEVKSTENATNLIGDDGKIVIVGIFLQFSGEEFENYTALAEKLRSDYDFGHTLDAKVLPRGEASVTGPIVRIFKPFDELFVDFEDFDMDAIEKFIEESNVPVVTVFNNDKTKHRYVMKFFENEKDDKAMLFYNFSTELALSFESNFRKLAKEYKGKSIHFLIGDVDPSEGALQYFGVRDDQVPAVVIHTNSGPKYMKPNVDPDQIAPWFKQYEAGNVLPYMKSEPIPEKNDEPVKVVVHDSIQDIVFNSGKNVLLKFYAPWCGHCKSLAPIIEEVAIAYETDPDVIVAKLDATSNDFPTETFDVNGYPTLYLVSASGKVSEFDGERTKEAIVDFIEKNRDVIAGKDSNREKEQIDDAKNKQIDFEAKDEL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1771070 1773849 + BLOR15996 Blo17g00175 72563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00175 521 Gene3D Glutaredoxin 380 493 - -
Blo17g00175 521 Gene3D Glutaredoxin 148 252 - -
Blo17g00175 521 SUPERFAMILY Thioredoxin-like 152 252 IPR036249 -
Blo17g00175 521 Gene3D Glutaredoxin 26 147 - -
Blo17g00175 521 CDD PDI_a_family 40 141 - -
Blo17g00175 521 CDD PDI_b'_family 266 363 - -
Blo17g00175 521 PRINTS Thioredoxin family signature 110 121 - -
Blo17g00175 521 PRINTS Thioredoxin family signature 57 65 - -
Blo17g00175 521 PRINTS Thioredoxin family signature 65 74 - -
Blo17g00175 521 ProSitePatterns Thioredoxin family active site. 405 423 IPR017937 -
Blo17g00175 521 ProSitePatterns Thioredoxin family active site. 58 76 IPR017937 -
Blo17g00175 521 PANTHER PROTEIN DISULFIDE-ISOMERASE 21 507 - -
Blo17g00175 521 TIGRFAM ER_PDI_fam: protein disulfide isomerase 39 511 IPR005792 GO:0003756
Blo17g00175 521 ProSiteProfiles Thioredoxin domain profile. 363 491 IPR013766 -
Blo17g00175 521 SUPERFAMILY Thioredoxin-like 249 382 IPR036249 -
Blo17g00175 521 CDD PDI_b_family 151 248 - -
Blo17g00175 521 SUPERFAMILY Thioredoxin-like 350 489 IPR036249 -
Blo17g00175 521 ProSiteProfiles Thioredoxin domain profile. 12 148 IPR013766 -
Blo17g00175 521 Gene3D Glutaredoxin 253 379 - -
Blo17g00175 521 PANTHER PROTEIN DISULFIDE ISOMERASE 21 507 - -
Blo17g00175 521 MobiDBLite consensus disorder prediction 497 521 - -
Blo17g00175 521 SUPERFAMILY Thioredoxin-like 39 149 IPR036249 -
Blo17g00175 521 Pfam Thioredoxin 386 488 IPR013766 -
Blo17g00175 521 Pfam Thioredoxin 39 145 IPR013766 -
Blo17g00175 521 Pfam Thioredoxin-like domain 176 360 - -
Blo17g00175 521 CDD PDI_a_PDI_a'_C 384 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00175 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - mnt:21396535 673.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01298 Blo17g00175 CCT
Blo01g01298 Blo17g00175 ECH
Blo17g00175 Blo18g00181 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01298 Blo-Chr1:49781028 Blo17g00175 Blo-Chr17:1771070 0 dispersed
Blo07g00753 Blo-Chr7:24454192 Blo17g00175 Blo-Chr17:1771070 1.48E-40 dispersed
Blo17g00155 Blo-Chr17:1451870 Blo17g00175 Blo-Chr17:1771070 2.06E-10 dispersed
Blo17g00175 Blo-Chr17:1771070 Blo18g00166 Blo-Chr18:1561359 1.36E-10 dispersed
Blo17g00175 Blo-Chr17:1771070 Blo18g00181 Blo-Chr18:1722069 1.18E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00175 Blo_Chr17 FPKM 8.390573 10.78518 12.815551 14.170304 2.39886 2.414941 2.635208 26.044205 26.023716 25.903791