Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00180 ATGGCGGACGAAGCGAAAGGAACCGAAGCCCTAGCTTTGGAAGCGAAGGCTACGGCTCAAAATATCGAATCGAAGATTCAGACTGCTATGCACTCCCTCGTCTCCCACTTCAAGGAACAAGCCGATTCATTGACTTTTGAGGGTGTGCGGAGGTTGTTGGAGAAAGACTTGGGATTGGAAATATATGCATTGGATGTGCATAAGAGATACATCAAGCAATGTTTGGTAAAGTGCTTAGATGGCACTGATGATGACAATCCTTCAAAGAATACTAAGGGAACTGGTATGAAAGATGCAAGTGGGGTAGAAACAGCTAATACACATGATTTGCATCATTTGAAAGATGTAAAGCAATCATATTCCGAAGATGAGGACAAAATGGAAGATTCTCCAGTGATTGGCCAACTGACTGGAAAAATCGTGAAGATTGAATCTGAGGGAATAAAAGGCGATGAAACGAAGGAAGTCCCCAGTGAAAGCACAATAAAGAACGCCATCAGGAAAAAACTTTCGTATATTAAAGCTAATTCTGAAAAGGTCACTATGGCTGGTCTTCGCCGAATTTTGGAGGATGATCTTGGTCTCAATAAATTTACTCTTGATACACGTAAAAAGTTTATAAGTCAGCAAATAGAGGAAATGTTAAATTCTTTTGAAGTTTCTAAGCCTGCTACCCAAGCAAAGAAAAGTTCTATATCCAAAGCATCTAAAAAAGTCAGCCGTGATGAAGATTCTGATTCTGTAGAGAGTGAGAGCAGTGAGGAAGAAAATGGCAAAGTGAGGAAGAAAAATGTTCCTACAAGGAAATCTCAGAACTCTGATGGCCTTAAAAAGAGGAAAAGACCTCAGAAGGAGACCATCTCTAGCAAGAAGCATAGCAAGCCACAAAAGATGTCAGAGGTCAATAGCGACCAAGAAGACAGTGGAGCTGTGTCTGAAGACAGTGAAGAGGGTCAATCACAATCATCTACGGAAAAACCTGCCAAGAAAAAGGAAGCCTCTACTCCTGTCTATGGCAAACGTGTGGAACATCTAAAATCAATTATCAAATCATGTGGGATGAGTGTTCCCCCCTCAGTGTATAAGAAAGTTAAGCAGGCATCAGAAAATAAACGAGAAGGCCAATTAGTAAAGGAGTTGCAGGAGATACTTTCTAGGGAAGGACTATCTGAAAATCCATCTGAAAAAGATATCAAGGAAGTCAGGAAGAAGAAAGAAAGAGCAAAAGAACTTGAGGGCATTGACGTTAGTAATATTAGGAGGAAGAAAAAGACAGTGATTAAGTCCTCAAGAGAGCTAGCAAGACCAAGGACTCCATAG 1320 40.76 MADEAKGTEALALEAKATAQNIESKIQTAMHSLVSHFKEQADSLTFEGVRRLLEKDLGLEIYALDVHKRYIKQCLVKCLDGTDDDNPSKNTKGTGMKDASGVETANTHDLHHLKDVKQSYSEDEDKMEDSPVIGQLTGKIVKIESEGIKGDETKEVPSESTIKNAIRKKLSYIKANSEKVTMAGLRRILEDDLGLNKFTLDTRKKFISQQIEEMLNSFEVSKPATQAKKSSISKASKKVSRDEDSDSVESESSEEENGKVRKKNVPTRKSQNSDGLKKRKRPQKETISSKKHSKPQKMSEVNSDQEDSGAVSEDSEEGQSQSSTEKPAKKKEASTPVYGKRVEHLKSIIKSCGMSVPPSVYKKVKQASENKREGQLVKELQEILSREGLSENPSEKDIKEVRKKKERAKELEGIDVSNIRRKKKTVIKSSRELARPRTP 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1841639 1844822 + BLOR16001 Blo17g00180 72568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00180 439 MobiDBLite consensus disorder prediction 272 301 - -
Blo17g00180 439 MobiDBLite consensus disorder prediction 319 340 - -
Blo17g00180 439 MobiDBLite consensus disorder prediction 235 263 - -
Blo17g00180 439 Pfam DEK C terminal domain 157 215 IPR014876 -
Blo17g00180 439 PANTHER HIRA-INTERACTING PROTEIN 3 1 422 IPR037647 -
Blo17g00180 439 MobiDBLite consensus disorder prediction 222 340 - -
Blo17g00180 439 SUPERFAMILY DEK C-terminal domain 153 216 - -
Blo17g00180 439 MobiDBLite consensus disorder prediction 82 128 - -
Blo17g00180 439 MobiDBLite consensus disorder prediction 104 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00180 - - - zju:107404639 442.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011404 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00180 Blo_Chr17 FPKM 20.14386 24.568018 24.377161 23.602203 47.935188 40.95829 49.230709 31.169355 28.800262 31.898991