Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00182 ATGATGAGGGGTGAAGTTGAACAGTGTGTGATCGAGAGAGTCGACGGTGGCGATAAGGAGAAGAAGAAGAAGCGCCGATCTAATCGTCGATCCAAGCAGAATGCCTCTTGCATTAGCTCAGCATCTTGTAGTTCAATCAATGGAATAAATTGGGAGGCATCCACCTGCTTAAAAAATTTCAGAATAGATAACGATGTGGCTGGACCTTTAAATGATCCTTCTTTAAAGAAACATACAATTGACACACTTTCCCCCACTGAAGATGGGTTGACAAGTACAGTTAATGTTTCTTCTAGTTCTTTGCCAGCAATGCATATGATTGAATACGAGGATATATTGGAGTCACAGATCTCAAAAAGTCAACATCTTTCTTCCAATTGTGTTTTAATCTCAAAATCACGCTCTCAACTTGAACAAGGGGTTATACTGGATTCACAAATCTCAAAAAATCAGCATGTTTCTTTTAATGGCAATGGAAGTGTAATGTCAAAACTGTGCCCTCAACTTATTGCTTATACACATAATGGTTTATCTCCTTCACATCAAGTTGGTGGTCACGCACAAAGGAAATATTTCCCTCCACACTGGTCCATGGAGGCTGTAAATAAGGCGGTTCAGAAGGGTGAGGTTTTCAAAGCAGTTATCCGCATTAATGCTCATAATAAGCTCGAGGCCTACTGCAAAATTGATGGGGTACCAACTGATATTCTCATTAATGGAATTCTCTTACAGAATAGAGCTGTGGAAGGAGACATAGTTGCTGTTAAGTTAGACCCTGTAACATTATGGACCAGGATGAGAGGGTCAATCGAAGTATCTTACAATTCAACCCCAATGAAAGATAGTAATTTTGTCACTGAAGATAGTGAAATTGAGCTTCATAATTGCAAAGGCAAATGCACGGTAGATGGTGAATCTGAGTGTAGCTATGCATGTCCTCAATTTCCTTCCAAGGAGGCTTCTAATGAGAGTGGTACATTTTTGGATAAAGATATCTGTTTAGATGAGCCTTTAACTAGTGCTCACCAGGTAGATGAATACTGTCTCTCTAATGCGCTAGGCAATTTGTGTCATATGATTGGTTCATTTCCTACAAAAAGACCAACAGGTAGGGTTGTAGCAATCATTGAAAGGTCTCCACGACGAGATACTGTTGTTGGCTTTCTCAACGTCAAGCAGTTGGTAACTTGCAGGGAAGATCAAAAAGAGGTGAAGAAGACTAACAACGTCTCTTCATTTTCTGACCATGAGTTCATCCAGCTGACACCAACTGACCCTAGACTTCCAAAAATGATGGTTTCTGTGAGATACCTGCCTGACTTTATCAAAAAGAGATTAGAGAAAGGTGATGCAACAGTTGAACGTGAGCTGGTAGGAGTAGGAATTGAAGATTGGGGAGAGGAGAGTTCTTTTCCACTAGCTCGAATCCTACACATTCTGGGGAGGGGAGGAGAAATTCAGTCACATATAAATGCAATATTGTTTGAAAATGATATCCGTTCATGTGAATTTTCTCCCGATTTACTTCCTTGGATCCCACAAGGTAGTTGGGAGGTCCCACTCAGTGAATATCAAGAAAGAAGAGATCTTACGAATTTATGCATATTTACTATTGATCCTGCTACTGCAACAGAGTTGGATGATGCTCTTTCAGTCGAAAAGTTAGCGAACAACATTTATAGGGTAGGTGTACATATTTCTGATGTGTCATATTTTGTTTTACCTAACACGGCCTTGGATATGGAAGCTCAAGAACGGTCAACAAGTGTCTATCTACTGGATCGCAAAGTACCAATGTTGCCTCCACTACTTTCGGAGGATATAGGTTCACTTAATCCTGGTGAGAATAGACTAGCCTTTTCTATGTTTTTTGACATCGATCATATTGGGGGTGTTATTGACCGTTGGATTGGCCGTACAGTGATACGGTCGTGCTGCAAGCTTTCATATGAACTTGCTCAGTTCATTGTTGAGGGGTTGTTTGACGGAGAGAGTTCAAAAACTTGGAAGAATGTTTATCCCCAGTTGCATGGTCAATTTCAATGGAAAGATGTAATTAGATCTGTTGAAAGCCTGAATGATATTTCAAAATCTTTAAGAAAGAATAGGTTTAGCAATGGGGCTTTACGACTTGAAACGCCCAAATATGATAGCATGCCCTGTGAACGGAATGACTCAAACTTTCTTGTAGAAGAGTTTATGCTTCTAGCAAATACAACAGCTGCTGAAGTCATATCAAGGGCATTTCCTGCTAGTGCTCTGCTAAGAAGACACCCTGAGCCTAATATTAGGAGGCTCAGAGACTTTGAGGCGTTTTGTTTAAAACATAGTTTGGAGTTTGATGCGTCATCCTCTGGGCATTTCAACCAATCTTTGGAGAGACTCAAGCTGAAACTCAAGAATGATTATGTCTTGTTTGATATTCTGAACTCCTATGCTTCAAGGGCTATGCAATCAGCAACTTACTTTTGCAGTGGAGAGTTTAAAGACAGTGTAAAAGATTGGTATCATTATGCTCTGGCTGTTCCACTTTACACTCATTTTACTTCACCACTACGCCGATATCCTGATATTATAGTTCATCGTATCCTTGCCTCTACTGTTGAGGCTGAGAAGGCTTTGAAGCAACAAAGTACATTTAATAATGTACATAGGAGTGAGGAAATAACTGGAAAATGCTTTACTGGTCTTCTTTTTGATAAAAGTGCTGCAGAATCCCTGGAGATGGGGAAAGCATTATCTGCTGCAGCACTTACACATAGAGTTCCCGGCACAGAACCACTTGCTGGTATTGCTGCCTATTGCAATGAAAGAAAACTGGCTAGTCGACATGCCAAGGATGCCTCTGATAAACTCCACATGTGGGCTATGCTAAAGAAAAATGAGTTCTTAATTACAAATGCAAGGGTCTTGGGTCTTGGACCCAGATTTATGTCAGTTTATGTGCACAAGCTTGCAATTGAGCGGAGAATATATTATGATGAAGTTGAAGGCTTGACAGTGGAATGGCATGATGTTACTTCTTCATTGATTCTTAGTCTCTGTGCAAACAAGCGCTCAATTAAGCGAGGAAGCCCGAGTAAATGGAGGGCACTTGAAGAAGTTGCACTAGTGGTCTCACCTTGTGACCTTACATGTGAAAATGACAAAATCGAAGGAAGTTTTAGCCAGTTTGGTTCAGCACAAGTCGGATATACTGATGTTAAATCTATTAATTTTAAGACTGAAATTGATCCTCCAGTTTTTCCGCTCACCATGCGTCTGCTTTCCACAATTCCAGTAGTACTCCATGCTGTTGGTGGGGATGATGGTCCTATCGATATTTCAGCGAGATTGTTTACCAGCTCATACTTGAGAACCACCCCCCACCGAAGAGGAGTTGAAGGTAAAAATGGCTGCCTGCAACTGGACCAGCGAGTTGTCGTCGCTGGTGGGTTGGGATACTCTCTCTTCTGGTTCAGAAGTAGGAGAGTACATATGTGA 3483 40.97 MMRGEVEQCVIERVDGGDKEKKKKRRSNRRSKQNASCISSASCSSINGINWEASTCLKNFRIDNDVAGPLNDPSLKKHTIDTLSPTEDGLTSTVNVSSSSLPAMHMIEYEDILESQISKSQHLSSNCVLISKSRSQLEQGVILDSQISKNQHVSFNGNGSVMSKLCPQLIAYTHNGLSPSHQVGGHAQRKYFPPHWSMEAVNKAVQKGEVFKAVIRINAHNKLEAYCKIDGVPTDILINGILLQNRAVEGDIVAVKLDPVTLWTRMRGSIEVSYNSTPMKDSNFVTEDSEIELHNCKGKCTVDGESECSYACPQFPSKEASNESGTFLDKDICLDEPLTSAHQVDEYCLSNALGNLCHMIGSFPTKRPTGRVVAIIERSPRRDTVVGFLNVKQLVTCREDQKEVKKTNNVSSFSDHEFIQLTPTDPRLPKMMVSVRYLPDFIKKRLEKGDATVERELVGVGIEDWGEESSFPLARILHILGRGGEIQSHINAILFENDIRSCEFSPDLLPWIPQGSWEVPLSEYQERRDLTNLCIFTIDPATATELDDALSVEKLANNIYRVGVHISDVSYFVLPNTALDMEAQERSTSVYLLDRKVPMLPPLLSEDIGSLNPGENRLAFSMFFDIDHIGGVIDRWIGRTVIRSCCKLSYELAQFIVEGLFDGESSKTWKNVYPQLHGQFQWKDVIRSVESLNDISKSLRKNRFSNGALRLETPKYDSMPCERNDSNFLVEEFMLLANTTAAEVISRAFPASALLRRHPEPNIRRLRDFEAFCLKHSLEFDASSSGHFNQSLERLKLKLKNDYVLFDILNSYASRAMQSATYFCSGEFKDSVKDWYHYALAVPLYTHFTSPLRRYPDIIVHRILASTVEAEKALKQQSTFNNVHRSEEITGKCFTGLLFDKSAAESLEMGKALSAAALTHRVPGTEPLAGIAAYCNERKLASRHAKDASDKLHMWAMLKKNEFLITNARVLGLGPRFMSVYVHKLAIERRIYYDEVEGLTVEWHDVTSSLILSLCANKRSIKRGSPSKWRALEEVALVVSPCDLTCENDKIEGSFSQFGSAQVGYTDVKSINFKTEIDPPVFPLTMRLLSTIPVVLHAVGGDDGPIDISARLFTSSYLRTTPHRRGVEGKNGCLQLDQRVVVAGGLGYSLFWFRSRRVHM 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1858004 1863916 - BLOR16003 Blo17g00182 72570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00182 1160 ProSitePatterns Ribonuclease II family signature. 837 861 IPR022966 -
Blo17g00182 1160 PANTHER DIS3-LIKE EXONUCLEASE 2 74 1117 - -
Blo17g00182 1160 Pfam Dis3-like cold-shock domain 2 (CSD2) 419 498 IPR041505 -
Blo17g00182 1160 Gene3D - 184 287 - -
Blo17g00182 1160 Gene3D - 401 485 - -
Blo17g00182 1160 SUPERFAMILY Nucleic acid-binding proteins 488 960 IPR012340 -
Blo17g00182 1160 Hamap DIS3-like exonuclease 2 [DIS3L2]. 19 1094 IPR028591 GO:0000175|GO:0034427
Blo17g00182 1160 Pfam RNB domain 527 867 IPR001900 GO:0003723|GO:0004540
Blo17g00182 1160 PANTHER RIBONUCLEASE 74 1117 - -
Blo17g00182 1160 SMART RNB_2 527 870 IPR001900 GO:0003723|GO:0004540
Blo17g00182 1160 SUPERFAMILY Nucleic acid-binding proteins 369 500 IPR012340 -
Blo17g00182 1160 SUPERFAMILY Nucleic acid-binding proteins 189 378 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00182 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - qsu:112003113 1195.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01111 Blo-Chr1:39612917 Blo17g00182 Blo-Chr17:1858004 2.32E-18 dispersed
Blo05g00668 Blo-Chr5:22017319 Blo17g00182 Blo-Chr17:1858004 7.16E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00182 Blo_Chr17 FPKM 14.130363 15.288714 11.283654 11.16286 47.10894 48.079712 55.327736 0.23447 0.0 0.0