Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00186 ATGGCTTCCCTCCTCCATTTTCTTTCCCAAGTTTTGATTTTTATTATTTTAATATCGACAGGAACAACACTCTCCGAGTGCGCAAGAGTATTCACGATAATCAACAACTGCAAAGAGACAATATGGCCGGCAATTACTCCCGGAGAAAATTTCAACGGCGGTGGCTTTCAGCTAAAATCCCGCCAGTCCATCGTCCTCAACGCCCCAGTTGGCTGGTCCGGTCGGATATGGGGTCGAACTGGTTGCAACTTCGATAAAAACGGTAACGGCACTTGCCAAACAGGAGCATGTGGCTCTTCCCTCAAGTGCACAGCATCCGGCGAACCTCCGGCTTCTCTCGCAGAGTTCACTCTTGCCTCTTTGGATTTCTACGACGTCAGCCTCGTCGACGGCTTCAACTTACCTATGGCAGTGAACCCCATTAATGGCAAAGGAAACTGCAGCGTCGCCGGGTGTGATGGCGATCTAAGAACCAGTTGTCCGAAGGAACTTTCAGTGAAATCAGGGGGGAAAACGGTAGCTTGCCGGAGCGCCTGCGATGTGTTCAACACCGACAACTACTGCTGCAGAGGAGTATTCGGAAACTCTGCAACTTGTCAGCCGACGTATTATTCGAAGCTATTTAAGGAGGCTTGTCCTTCTGCGTATAGCTACGCTTATGACGATCCGACCAGTATCTTAACTTGCTCCGGCACCGATTACATCATCACGTTCTGCTCTTCCAGGCTGCTTACAGTGGAATTCAATCTAGACATGGATCTTCGTCCTCCGGGAGACGTTTTGAGTACGTGCGAAGGCGGGACTGCTGGAATGCTTGCAGTTGCTACTTTTCTCTTCGTTGGAAGTGCCTGTTTTGTCATAATTGATAAACTCGCATTTCTCCCTCCCACTCATTTTGATTGCTTCCGAGTAGAAGTTTTCTTCTCACTCTTTTTTATGGATTTCAACCGGATTGCTATTCCTTCACGCTTTTGCGGGAAAGAGGATCTGCGTGCAGTCATGTCTTTTCCCCTAAAGAGCAATCCGGACTATTCCCACCATGGCAAGAGAAAACATGTTATGGCGGTGAAGAGGAGTTACTTTTGCCCAAAATAG 1095 48.31 MASLLHFLSQVLIFIILISTGTTLSECARVFTIINNCKETIWPAITPGENFNGGGFQLKSRQSIVLNAPVGWSGRIWGRTGCNFDKNGNGTCQTGACGSSLKCTASGEPPASLAEFTLASLDFYDVSLVDGFNLPMAVNPINGKGNCSVAGCDGDLRTSCPKELSVKSGGKTVACRSACDVFNTDNYCCRGVFGNSATCQPTYYSKLFKEACPSAYSYAYDDPTSILTCSGTDYIITFCSSRLLTVEFNLDMDLRPPGDVLSTCEGGTAGMLAVATFLFVGSACFVIIDKLAFLPPTHFDCFRVEVFFSLFFMDFNRIAIPSRFCGKEDLRAVMSFPLKSNPDYSHHGKRKHVMAVKRSYFCPK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1904974 1908017 + BLOR16007 Blo17g00186 72574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00186 364 CDD TLP-PA 30 239 - -
Blo17g00186 364 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 9 254 - -
Blo17g00186 364 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Blo17g00186 364 PANTHER OS03G0233200 PROTEIN 9 254 IPR001938 -
Blo17g00186 364 SMART tha2 31 240 IPR001938 -
Blo17g00186 364 Pfam Thaumatin family 35 239 IPR001938 -
Blo17g00186 364 Gene3D Thaumatin 30 239 IPR037176 -
Blo17g00186 364 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Blo17g00186 364 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Blo17g00186 364 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Blo17g00186 364 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Blo17g00186 364 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Blo17g00186 364 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Blo17g00186 364 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00186 - - - cit:102616563 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01321 Blo-Chr4:28962392 Blo17g00186 Blo-Chr17:1904974 6.58E-108 dispersed
Blo17g00186 Blo-Chr17:1904974 Blo18g00825 Blo-Chr18:24351434 3.12E-79 dispersed
Blo17g00186 Blo-Chr17:1904974 Blo18g00192 Blo-Chr18:1864808 4.78E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g310 . . . . . . . . Cmo04g02452 Cmo15g00713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00186 . . Bda13g01491 Bpe02g01628 Bpe14g00373 . Bma02g00227 . . . . . Car04g02271 Car15g00645 Cpe01g02032 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006626 1 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 3 1 1 38