Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00187 ATGGAGAAACCTTGGGGGCGTTTCGTATGTCTTTTCAGCAGTAAATCTCTCAATATTTCTGCTCGACGAGGACTGCTACGTAAGGAGAAGGAAGAAGATTCCGGGAAGAAGATTAAGAAAATAAGATATTGTTCTGGTTCGCTTTGTGGTGGCACGAAGGTGATGCAAAGGCCTGAAACTGGGTCGCCGGAGTTTTGCAAGAAAAGGGCTTTAATGGCTTCATCAAGCAACTCCATTGCTGATTCTTCTAGCTCTACCAGGTCCATCAAGTCTCCTCTTTACAAACATAACAGCTGTGGTGGGTCTCGTCTTTCCACGTCTTCTTCTTCTTCTTCTTTTTCTGCAACTTCTAGCGCCGTCATTAATGGCGGCAGCGGTTCTCTCAGAGCAATTCCTTCCAGAAAATTCTCCGGGTGTTATGAGTGTAAAATGGTGATGGATCCCATTCTTGGATATACGAAAGATCTTTCTTTTAGATCAGGCATTTTTCCTTGTCCGATGTGTGATGAGATTTTCATGAAGTCTGAAAATTTGGAGCTTCATCAGGCTACTAGTCATGCTGTGTCTGAACTAGATCCAGAAGACACAAGCAGAAAGATTGTGGAAATTATATTCAAATCAAGTTGGAGGAAGAAGGAGCCTTCAAGCTGCAAGATAGTGCAAATCCTCAAAGTCCACAACACCCAAAAAACCGTTTCGAAATTCGAAGAATACAGAGACGCCATTAAAGCGAAAGCAACGAAGCTCCACAAGAAACACCCCCGCTGCCTAGCGGACGGAAACGAGATGCTCCGATTCCACTGGACCACCATAGCTTGCTCTCTGGGCGTCAATGGCAGAACCGAACTCTGCCACGCGATTCATCCTCCGTGCAGTATGTGCAGCATCATAAGGGGTGGCTTCAGGGCGGCGGAAAAGGGTATTCTGACGACGGCCACAAGTGGGGCGGCGGATGACAGAGCAGGGGAGGCGGTGGAGGGGAATGAGAAGAGGGCGATGATGGTCTGTAGAGTGGTGGCGGGGAGGGTGAAGAGGAGCGTGGAAGGGGGAATGGAGGAGTATGACTCAGTGAGTGGAGGTGTGGGAGTTTATTCTAAGTGGAACGAGTTGTATGTTTTTAATCCCAAGGCTATATTGCCTTGTTTTGTTGTTGTTTACGAAGGGATTAGTGCTTAA 1176 47.19 MEKPWGRFVCLFSSKSLNISARRGLLRKEKEEDSGKKIKKIRYCSGSLCGGTKVMQRPETGSPEFCKKRALMASSSNSIADSSSSTRSIKSPLYKHNSCGGSRLSTSSSSSSFSATSSAVINGGSGSLRAIPSRKFSGCYECKMVMDPILGYTKDLSFRSGIFPCPMCDEIFMKSENLELHQATSHAVSELDPEDTSRKIVEIIFKSSWRKKEPSSCKIVQILKVHNTQKTVSKFEEYRDAIKAKATKLHKKHPRCLADGNEMLRFHWTTIACSLGVNGRTELCHAIHPPCSMCSIIRGGFRAAEKGILTTATSGAADDRAGEAVEGNEKRAMMVCRVVAGRVKRSVEGGMEEYDSVSGGVGVYSKWNELYVFNPKAILPCFVVVYEGISA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1909693 1911163 - BLOR16008 Blo17g00187 72575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00187 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 191 IPR013087 -
Blo17g00187 391 ProSitePatterns Zinc finger C2H2 type domain signature. 165 186 IPR013087 -
Blo17g00187 391 MobiDBLite consensus disorder prediction 94 113 - -
Blo17g00187 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 387 - -
Blo17g00187 391 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 34 387 - -
Blo17g00187 391 Gene3D - 186 388 - -
Blo17g00187 391 SUPERFAMILY ADP-ribosylation 188 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00187 - - - qlo:115960248 443.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00683 Blo17g00187 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01167 Blo-Chr3:38026367 Blo17g00187 Blo-Chr17:1909693 1.58E-65 dispersed
Blo11g00062 Blo-Chr11:482278 Blo17g00187 Blo-Chr17:1909693 5.96E-126 dispersed
Blo12g00885 Blo-Chr12:27044154 Blo17g00187 Blo-Chr17:1909693 6.14E-83 dispersed
Blo17g00187 Blo-Chr17:1909693 Blo19g00233 Blo-Chr19:11583379 2.06E-32 dispersed
Blo17g00187 Blo-Chr17:1909693 Blo12g00683 Blo-Chr12:25082669 1.01E-134 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g315 . Blo12g00683 . Bda03g00523 Bpe02g00078 Bpe04g00477 . Bma01g02640 Cmo04g02449 Cmo15g00715 . . . . . . . . . . . . . . . . . . . . . Cone4ag1379 Cone7ag1552 Cone17ag1266 . . . . . Blo17g00187 . . Bda01g01412 Bpe02g01625 . Bma01g00833 Bma02g00231 . . . . . Car04g02261 Car15g00647 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003484 2 1 3 5 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13495 None None None None Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00187 Blo_Chr17 FPKM 15.674373 17.088268 7.587628 7.673823 10.416573 11.307995 11.197406 7.500924 6.868315 7.180742