Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00188 ATGGAGAGGGAGGTTAATCTTCTGGTCCCTTCTGCAATTCCAAAGAACTTCAACTGCTCTGTCAACCCCGATACCTCGTCTTCTTTCTCTTCCTCCCCGCCGGAGTTCCTCCGCCATGTTCAAGCTGCCTTCAAGCGCCATCGTCCTCTCCGTACATTGCCGCAGACTAGTATAAGGCCTAGGCGCTTGTTGGTCCCCCAGAATGAGATATCTAAGAGTTCCGCTACCCACTGTGGGATCGATGTGGGTGTGAATAAGCCCCAGCCAAATATTTCAATAAATCATGGCCATCCAGTTAAGAATTTGACTGTTCAAACTAAGAGCACAATGCCCATTGTTGGGGAAACTCAAGAAGATGAATCAATAACACCACCATCTAATGTTGGCACCTTTACTGAAGGCTTTGATGAAAGGCTCGATTCGTATGTTGCACAGGGAGATGAATCAGAACGAGCTTCTAGTTGTGTAGATAAGACCTCAATTTCCTCATTACATGTAGGATCTCAGCAGGTTAAGGGAAAGAAAATGGTTCACTTTTCATCTGGGCATAATAATACTTCTCAGGGAGCTGTATATGTCGTAAGGGAAAGAATAATCTCCACATTATTTGCTAATACAGAAATGGAGTGGATAACAAGCAGCAACCAAGGCGAGTCATCTGTTATAATTAATGATGATGAATCAAATAATCAGAAGTTTCAGGATGCAGCAGAATCTGATGTAAATTTGAGATTCAATGGTGGGGTTTCTTCGCTGTCACAGAGGTTGCCAACTGCAGAAGATGCTCTGCGTACTTTTCAAAACTTTTTGAATAAGCCTCTTGCACAATCTTCAGCAGGGGGGACATCTAGTGTTACTACAACATCTGTCCACTCCACATCTGCACCTATGCTTAATTCAACAACCTACTGTCCTCATTCATGTCGAGATGTCAGTACTGTTGCCACCTTAGAATCTTTGGGAAGCTTGAAAGTGAATTCTCATCGTGTGAATTCATCTCATAAAGAAATAAGTGGAGTAGTAACCAATAAGCCTCCTCCTGCAGCCCAAGTTCATGATTCTGCTACTAGTACTAAAACAGAAGTGATGCAATTTATTAATGGCAACGAGAGAAAATCAACTCTACCCCAGGAAAGTAGTATTTCAAAATGTTCTTCTCTACTTGATAATAAGTTGACAGAAATGCAAGAATTGGTTGGTGATGGAGGAGGTAGCGTGCAATCACAGTCGAATTTGCACAAAAACTTAGCTTCAGATGTGAAGTTGGATTCTTCTAGATCACGAAAGCAAGAAAAGGTTGATAGTACTAAAACAGCCCCGCGTAAAAGAAATTATGATCCTGACTTGTTCTTTAAAGTTAATGGAAAGCTTTATCAAAGGCTTGGCAAGATAGGGAGCGGTGGAAGCAGTGAGGTCCACAAAGTCATTTCATCAGACTGCACAATCTATGCATTAAAAAAGATTCGGCTCAAAGGTCGAGATTACACTACTGCATATGGATTTTGTCAGGAGATTGTGTATTTAAACAAGTTGAAAGGGAAGAACAATATTATACACTTAATAGATTACGAGGTGACGGATAGAACTTTACTGGAGGAAGTCATGAATGGCTCCACTAGTAATAAAGATGCCAAGGTCAAGGATGATGGATATATTTACATGGTACTTGAATATGGTGAAATTGATTTGGCACACATGCTGTCCCAGAAATGGAAGGAAATAGATAGATCCTCCTCCAATCATACAATCGAGGAGAATTGGCTTCGATTCTATTGGCAGCAAATTCTTCAAGCTGTAAACACTATACATGAGGAGCGAATTGTTCACTCTGACTTGAAGCCAGCTAATTTTCTTCTTGTCAAAGGCTCCTTAAAGCTCATTGATTTTGGCATTGCAAAAGCTATTATGAGTGACACAACAAACATCCAAAGGGATGCACAAGTGGGCACATTGAGTTACATGTCACCTGAGGCATTCATGTGCAACGAGAGAGATGCAAATGGAAACACTATCAAGTGTGGTCGGCCGTCCGATATATGGTCTCTTGGCTGCATTCTTTATCAGATGGTTTATGGAAGAACACCATTCTCAGACTACAAGACTTTCTGGGCAAAGTTCAAAGTTATAACAGACCCAACGCACGAGATTAAATACGAAGCACTGTCTAATCCTTGGCTTCTTGATCTTATGAAAAAGTGTCTTGCGTGGGACCGCCATGAAAGGTGGAGAATTCCTCAGCTTCTCCGACACCCTTTTCTCGTGCCGCCAGTTCTACCCGAGATACCTCTTTCCCATGATCATATCTCGACATTGTTTCGATATATTGCCGAAACTTGTAGAAACGAGGAGGAAGCTTTAAGTCTCTGCTCTCAGCTCCAAAGACTCAGGTAG 2391 41.78 MEREVNLLVPSAIPKNFNCSVNPDTSSSFSSSPPEFLRHVQAAFKRHRPLRTLPQTSIRPRRLLVPQNEISKSSATHCGIDVGVNKPQPNISINHGHPVKNLTVQTKSTMPIVGETQEDESITPPSNVGTFTEGFDERLDSYVAQGDESERASSCVDKTSISSLHVGSQQVKGKKMVHFSSGHNNTSQGAVYVVRERIISTLFANTEMEWITSSNQGESSVIINDDESNNQKFQDAAESDVNLRFNGGVSSLSQRLPTAEDALRTFQNFLNKPLAQSSAGGTSSVTTTSVHSTSAPMLNSTTYCPHSCRDVSTVATLESLGSLKVNSHRVNSSHKEISGVVTNKPPPAAQVHDSATSTKTEVMQFINGNERKSTLPQESSISKCSSLLDNKLTEMQELVGDGGGSVQSQSNLHKNLASDVKLDSSRSRKQEKVDSTKTAPRKRNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIRLKGRDYTTAYGFCQEIVYLNKLKGKNNIIHLIDYEVTDRTLLEEVMNGSTSNKDAKVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDRSSSNHTIEENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDAQVGTLSYMSPEAFMCNERDANGNTIKCGRPSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPTHEIKYEALSNPWLLDLMKKCLAWDRHERWRIPQLLRHPFLVPPVLPEIPLSHDHISTLFRYIAETCRNEEEALSLCSQLQRLR 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1912747 1917110 + BLOR16009 Blo17g00188 72576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00188 796 Pfam Protein kinase domain 458 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00188 796 MobiDBLite consensus disorder prediction 275 297 - -
Blo17g00188 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Blo17g00188 796 MobiDBLite consensus disorder prediction 419 441 - -
Blo17g00188 796 CDD PKc_Mps1 456 753 - -
Blo17g00188 796 SMART serkin_6 458 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00188 796 ProSiteProfiles Protein kinase domain profile. 458 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00188 796 MobiDBLite consensus disorder prediction 416 441 - -
Blo17g00188 796 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 25 795 IPR027084 GO:0004712|GO:0007093|GO:0051304
Blo17g00188 796 PANTHER MIXED LINEAGE PROTEIN KINASE 25 795 - -
Blo17g00188 796 SUPERFAMILY Protein kinase-like (PK-like) 451 764 IPR011009 -
Blo17g00188 796 Gene3D Transferase(Phosphotransferase) domain 1 575 755 - -
Blo17g00188 796 ProSitePatterns Protein kinases ATP-binding region signature. 464 486 IPR017441 GO:0005524
Blo17g00188 796 Gene3D Phosphorylase Kinase; domain 1 451 538 - -
Blo17g00188 796 MobiDBLite consensus disorder prediction 336 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00188 K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1 [EC:2.7.12.1] - jre:109013664 910.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00188 Blo-Chr17:1912747 Blo13g00224 Blo-Chr13:9434105 6.82E-24 dispersed
Blo17g00188 Blo-Chr17:1912747 Blo17g00197 Blo-Chr17:1987384 8.88E-21 proximal
Blo17g00188 Blo-Chr17:1912747 Blo18g00194 Blo-Chr18:1876405 3.16E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84785 PF00069 Pkinase 8.00E-55 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00188 Blo_Chr17 FPKM 19.695473 20.423174 11.144138 8.837572 12.986939 8.904855 12.492839 7.838572 10.789759 7.822661