Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00189 ATGGAGGATTTACAGAGGGATCTAGAAAACGGCAGTCTAATGGTTTCTACACTACCGGAGAAGGGTCGGTGCCTCTTCACCACCAGGGATTTCTATCCAGGAGAAGTTATAATAAGTCAAGAACCTTATGTCTCTGTGCCAAACAACTCAAGAAATGATTCAAGATGTGATAGATGTTTTGTTTCTATTAACCTTAAAAGGTGCTCTTGTTGCCATGTTGTACGGTATTGTGGCAGTGGATGTCAGGTATGTTTTTGCTATGAATTCAACTCCAAGAATGAGAGAGAGAGAGGCATGCAGGGCCAATGTGATAATTTTAACAAAGTTTCTAGTGTCAGAGTCTATTTTTCTCATGGTTCGTGTTGCAGTTGTCCATCGCATTTAAATTTAGGAAAGTTGGAATGGAAGTTACATCATCTTGAATGTGATGCTCTCTCAAGGCTTGACAAGGATAGACGGAAAGCCGTTACTTCATCCTTACGACTAATGCTCAAGCTCCTCATTCGGAAAAAGTGTCAAAGTGAAAAGATCCTCCCTACAACCGCTACAGATAACTACAGTCTGGTAGAGGCGCTGGTGGCACATATGGCAAACATTGACGAAAAGCAAATGGTGATGTATGCTCAGATGGGTAATCTTGTGAGTTTGATACTCCAATGGCCTGATCTGAACATTAAAGAAATTGCAGAAAATTTTTCAAAGTTAGCATGTAACGCACATACTATTTGCGATAGCGAACTTAGACCCTTAGGGACGGGACTATATCCAGTGATCTCCATTATTAACCACAGATTCACCATTAATTATATCATTCTTCTAAGTGCTGGATGTTTAATCTACTGTAGCTGCTTGCCGAATTCTGTTTTGGTATTTGAGGGAAAGACTGCTGTGGTGAGAGCTGTGGCAAAAATACCAAAAGGGGAAGAGGTGTTGATAAGTTACATTGAAACTGCGGGAAGCACCATGGCTCGACAAAAGGCTCTGAAAGAACAATATTTTTTCAACTGCACCTGTATCCGCTGTGTTAAAGTGGGTCAAGCTGATGATATCCAAGAAAGTGCAATTCTTGAAGGTTACAGCTGCAAGAATGAGAAATGCGAGGGTTACTTGCTCCGAGATAATGATGACAAGGGATTTATATGTCGGCAATGCGGGCTTTTTAGAAAAAAGGAAGAGATCAATGACATTGCTGGGGAAATAAAGTCATTGACTGAAAAGGCTTTCGAGTTTATGACAGGGCGATATTATCAGGAGGCTATTTCTGTTTATGAGAAAATTGAAAAACTTCAAAGGAAATTGTGCCATCCCTTTTCAATCAATTTGTTGCAAACTAGAGAAAAGCTTCTAAAGATGTTGATGGAACTGGAAAATTGGAGAGAAGCTCTCAAATATTGTAGATTGACAATTCCTGCATACCATAGAATGTACCCTGGAGTTCACCCTCTTCTTGGACTGCAATATTATACTTGTGGGAAACTAGAATGGTTCGTGGGAGATACAGTGGATGCAGTGAAAGATCTCAATATGGCCATCGATATTCTGCGTGTTACACACGGGACAGAGACAAGTTTTATGAAAGAACTAATAATCAAGTTGGAGGAAGCTCGGGCCGAATCTTCGTATAAACGCTTGCCTAGCAATGAGTAG 1647 40.5 MEDLQRDLENGSLMVSTLPEKGRCLFTTRDFYPGEVIISQEPYVSVPNNSRNDSRCDRCFVSINLKRCSCCHVVRYCGSGCQVCFCYEFNSKNERERGMQGQCDNFNKVSSVRVYFSHGSCCSCPSHLNLGKLEWKLHHLECDALSRLDKDRRKAVTSSLRLMLKLLIRKKCQSEKILPTTATDNYSLVEALVAHMANIDEKQMVMYAQMGNLVSLILQWPDLNIKEIAENFSKLACNAHTICDSELRPLGTGLYPVISIINHRFTINYIILLSAGCLIYCSCLPNSVLVFEGKTAVVRAVAKIPKGEEVLISYIETAGSTMARQKALKEQYFFNCTCIRCVKVGQADDIQESAILEGYSCKNEKCEGYLLRDNDDKGFICRQCGLFRKKEEINDIAGEIKSLTEKAFEFMTGRYYQEAISVYEKIEKLQRKLCHPFSINLLQTREKLLKMLMELENWREALKYCRLTIPAYHRMYPGVHPLLGLQYYTCGKLEWFVGDTVDAVKDLNMAIDILRVTHGTETSFMKELIIKLEEARAESSYKRLPSNE 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1917818 1924334 - BLOR16010 Blo17g00189 72577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00189 548 Pfam SET domain 22 314 IPR001214 GO:0005515
Blo17g00189 548 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 539 - -
Blo17g00189 548 Gene3D Tetratricopeptide repeat domain 319 545 IPR011990 GO:0005515
Blo17g00189 548 SUPERFAMILY SET domain 14 343 IPR046341 -
Blo17g00189 548 SUPERFAMILY TPR-like 402 513 IPR011990 GO:0005515
Blo17g00189 548 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 539 - -
Blo17g00189 548 Gene3D SET domain 220 275 IPR046341 -
Blo17g00189 548 Gene3D SET domain 276 314 IPR046341 -
Blo17g00189 548 ProSiteProfiles SET domain profile. 11 315 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00189 K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD [EC:2.1.1.354 2.1.1.357] - cit:102613642 676.396
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g318 . . . . . . . . . Cmo15g00718 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0461 . . . . Blo17g00189 . . Bda13g01493 . Bpe14g00371 . Bma02g00234 . . . . . . Car15g00650 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005114 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 8 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13496 PF00856 SET 5.40E-12 No_clan Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00189 Blo_Chr17 FPKM 6.236339 7.628238 6.605592 6.225276 8.76627 7.215233 9.101699 7.288126 6.32557 6.669218