Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00193 ATGCCTCTTGCGCCTTCCGTCTCTGTAATCTGCAATGGCAGAAACATTACTCAAAGCTCTACTAGCCTCGCCTTTCCTCTGGCTTCCCCTCCTCTGGTGCGTGGTTTACAAATCAAGTGTGTCCGTGTTGGAGGGGTCGAGATTCCCAATAATAAGAGAATTGAGTTCTCCCTCCAGTACATTCATGGAGTTGGCCGGAGCAGGGCTCGAAAAATACTGTGTGATCTCAGCATGGAGAACAAAATCACTAAAGACTTGTCTCCGGAGGAACTCATTTCCGTCAGAGATGAAGTATCTAAATACATGATTGAAGGAGACTTGAGGAGATTCAATGCACTTAATATCAGAAGGTTGAAGGAGATTCAATGCTATAGAGGGATCAGGCACATTCAAGGACTACCATGCCGAGGGCAACACACCAAGAACAATTGCCGGACATTGAAGGGGAAGAGAGTGGCAATTGCCGGGAAGAAGAAAGCTCCTCGTTGA 489 46.83 MPLAPSVSVICNGRNITQSSTSLAFPLASPPLVRGLQIKCVRVGGVEIPNNKRIEFSLQYIHGVGRSRARKILCDLSMENKITKDLSPEELISVRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1957340 1959012 - BLOR16014 Blo17g00193 72581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00193 162 TIGRFAM uS13_bact: ribosomal protein uS13 42 151 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Blo17g00193 162 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 160 - -
Blo17g00193 162 ProSitePatterns Ribosomal protein S13 signature. 125 138 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Blo17g00193 162 ProSiteProfiles Ribosomal protein S13 family profile. 43 149 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Blo17g00193 162 Gene3D - 41 109 - -
Blo17g00193 162 SUPERFAMILY S13-like H2TH domain 41 152 IPR010979 GO:0003676
Blo17g00193 162 Hamap 30S ribosomal protein S13 [rpsM]. 40 156 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Blo17g00193 162 Pfam Ribosomal protein S13/S18 42 146 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Blo17g00193 162 Gene3D 30s ribosomal protein s13, domain 2 110 162 IPR027437 -
Blo17g00193 162 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 160 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00193 K02952 RP-S13, rpsM; small subunit ribosomal protein S13 - jre:109018770 280.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00193 Blo-Chr17:1957340 Blo12g00773 Blo-Chr12:26144529 7.00E-08 dispersed
Blo17g00193 Blo-Chr17:1957340 Blo01g01743 Blo-Chr1:57114552 4.05E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g323 . . . . . . . . . Cmo15g00725 . . . . . . . . . . . . . . . . . . . . . Cone4ag1375 Cone7ag1557 . . . . . . Blo17g00193 . . Bda13g01499 . Bpe14g00367 . Bma02g00238 . . . . . . Car15g00655 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010580 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00193 Blo_Chr17 FPKM 1.193961 0.92892 2.31346 2.673705 10.901143 9.8512 11.717493 3.583302 3.591137 3.315989