Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00195 ATGGCGGCAGTTTCGCGGCAGTTTGGTCATTTGGAACCGGCTTTGAATGGGGGTGTCATTCGTACTTTCAAGTCTGGGACGAACCACCGCTCGGATTCGCCTGTGCGGGGATGTAATTTTCCGGTGAGTGCTGAATTTCCTGTCCCGAGGAAAGCTTCTGGGTGGGAGGAGGATGATTACTCCAGCGATGAAGAGAATGAGAATGAATTTCTCGATTTGATTCTGAAGGGAAACGGAGATTTAGAGCCGTCGATCTTGGACGGGAGAGACGAGGGAACGGCTGATAATTGGATCGAGCGAAACTCTACCATGGTCCGCCTGACAGGGAAACACCCCTTCAATTCGGAGGCTCCATTAACCCGATTAATGAACCACGGCTTTATCACCCCGGTGCCTCTCCACTACGTCAGAAACCACGGCGCCGTTCCGGAGGCCAACTGGGAAACCTGGACCGTCGAGGTCTCTGGTCTAGTCAAACGGCCGACCAAATTCACGATGGATCAGCTGGTCAACGAGTTCCCTTCCAGAGAATTTCCAGTGACCCTCGTCTGCGCCGGAAACCGACGGAAGGAGCAAAACATGGTCAAGCAAACCATCGGTTTTAACTGGGGGGCGGCAGGCGTCTCCAACTCCATGTGGCGCGGGGTTCCGTTGCTCTACGTCCTCAAGCAATGTGGCATCTTCAGCAGAAAAAACGGCGGTCTCAATGTCTGCTTCGAAGGCGCCGAAGACTTACCGGGCGGCGGTGGGTCAAAGTACGGTACGAGCATCAAAAAAGAATTCGCTATGGATCCGTCCAGAGACATCATTTTAGCTTACATGCAAAACGGGGAGAGATTAGCGCCGGACCACGGCTTCCCGGTGAGAATAATAATCCCAGGATTCATCGGTGGTCGGATGGTGAAATGGCTTAAACGAATCATCGTCACTACCAAAGAATCGGATAACCATTACCATTACAAAGATAACCGAGTTCTTCCTTCCCACGTCGAGGCAGAGCAGGCGAACGCAGAAGGTTGGTGGTACAAGCCGGAGTATATAATAAACGAGTTGAACATAAACTCAGTCATAACCACGCCGTGCCATGAAGAAATCTTGCCCACAAATTCATGGACGACTCAGAGGCCTTACACTTTGAGGGGATATGCTTATTCCGGTGGAGGGAAGAAAGTGACGCGTGTGGAGGTGACAATGGACGGCGGAGAGACGTGGCACATGTGCACGCTGGACCATCCGGAGAAGGGGAGCAAGTACGGGAAGTTCTGGTGCTGGTGTTTCTGGTCTCTGGAGGTTGAAGTGCTCGACGTTCTTGCAGCCAAGGAGATAGCGGTCCGAGCTTGGGACGAAACTCTCAACACCCAGCCGGAGAAGCTCAACTGGAACGTCATGGGTCTCATAAACTACTGTTACTACTTATTATACGGGACGTGTGTTTGTCATGCAACTCTTAGAATTACACGTAAAAGCTTAGCTTATCCACCGATTAAAGTGTTATTAGGAATGATGAACAACTGCTGGTTCAGAGTGAGGACAAATGTTTGTAGACCACACAAGGAAGAGATCGGAATTGTGTTTGAGCATCCAACTTTGCCCGGAAACCAGTCCGCCGGATGGATGGCCAAAGAGAAACACCGCGAGATTTCATTGGAAACTAACCAGACCTTGAAGAAGAGCCTCTCCTCCCCCTTTATGAACAATACCTCCAAGACGTATTCCATGTTGGAGGTCAATAAACATAATAACGCTCAGTCGGCTTGGATCATCGTCCACGGCCATATCTATGACTGTACTCGCTTCCTCAAAGACCATCCCGGAGGTTCCGATAGTATTCTCATTAATGCTGGAACCGACTGTACTGAAGAATTCGACGCTATTCATTCCGACAAAGCCAAGAAGTTGCTCGAAGATTACAGAATCGGCGAGCTCATATCCACTGGTTACACCTCCGACTCCTCGTCTTCTTCTCCCAATATATAG 1977 50.28 MAAVSRQFGHLEPALNGGVIRTFKSGTNHRSDSPVRGCNFPVSAEFPVPRKASGWEEDDYSSDEENENEFLDLILKGNGDLEPSILDGRDEGTADNWIERNSTMVRLTGKHPFNSEAPLTRLMNHGFITPVPLHYVRNHGAVPEANWETWTVEVSGLVKRPTKFTMDQLVNEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSNSMWRGVPLLYVLKQCGIFSRKNGGLNVCFEGAEDLPGGGGSKYGTSIKKEFAMDPSRDIILAYMQNGERLAPDHGFPVRIIIPGFIGGRMVKWLKRIIVTTKESDNHYHYKDNRVLPSHVEAEQANAEGWWYKPEYIINELNINSVITTPCHEEILPTNSWTTQRPYTLRGYAYSGGGKKVTRVEVTMDGGETWHMCTLDHPEKGSKYGKFWCWCFWSLEVEVLDVLAAKEIAVRAWDETLNTQPEKLNWNVMGLINYCYYLLYGTCVCHATLRITRKSLAYPPIKVLLGMMNNCWFRVRTNVCRPHKEEIGIVFEHPTLPGNQSAGWMAKEKHREISLETNQTLKKSLSSPFMNNTSKTYSMLEVNKHNNAQSAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFDAIHSDKAKKLLEDYRIGELISTGYTSDSSSSSPNI 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 1969855 1973171 - BLOR16016 Blo17g00195 72583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00195 658 Pfam Cytochrome b5-like Heme/Steroid binding domain 575 642 IPR001199 -
Blo17g00195 658 Pfam Oxidoreductase molybdopterin binding domain 139 318 IPR000572 -
Blo17g00195 658 SUPERFAMILY E set domains 350 472 IPR014756 -
Blo17g00195 658 Gene3D - 350 561 - -
Blo17g00195 658 SMART Cyt_b5_2 571 643 IPR001199 -
Blo17g00195 658 PANTHER NADH-CYTOCHROME B5 REDUCTASE 58 480 IPR001834 GO:0016491
Blo17g00195 658 PANTHER NADH-CYTOCHROME B5 REDUCTASE 496 649 IPR001834 GO:0016491
Blo17g00195 658 CDD eukary_NR_Moco 90 511 - -
Blo17g00195 658 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 565 645 IPR036400 -
Blo17g00195 658 PRINTS Cytochrome B5 signature 593 603 IPR001199 -
Blo17g00195 658 PRINTS Cytochrome B5 signature 618 625 IPR001199 -
Blo17g00195 658 PRINTS Cytochrome B5 signature 603 617 IPR001199 -
Blo17g00195 658 PRINTS Cytochrome B5 signature 630 642 IPR001199 -
Blo17g00195 658 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 156 191 IPR022407 GO:0043546
Blo17g00195 658 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 87 348 IPR036374 -
Blo17g00195 658 Gene3D - 564 645 IPR036400 -
Blo17g00195 658 PANTHER NITRATE REDUCTASE [NADH] 2 58 480 - -
Blo17g00195 658 PANTHER NITRATE REDUCTASE [NADH] 2 496 649 - -
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 445 457 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 393 405 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 348 360 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 180 191 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 264 280 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 281 294 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 458 471 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 105 119 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 297 310 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 206 221 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 420 430 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 127 143 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 191 203 IPR008335 GO:0016491
Blo17g00195 658 PRINTS Eukaryotic molybdopterin domain signature 379 393 IPR008335 GO:0016491
Blo17g00195 658 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 568 643 IPR001199 -
Blo17g00195 658 Pfam Mo-co oxidoreductase dimerisation domain 346 471 IPR005066 GO:0016491|GO:0030151
Blo17g00195 658 Gene3D - 109 349 IPR036374 -
Blo17g00195 658 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 599 606 IPR018506 GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00195 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - vvi:100264320 1056.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00195 Blo18g00197 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00408 Blo-Chr10:7069643 Blo17g00195 Blo-Chr17:1969855 1.85E-54 dispersed
Blo16g00687 Blo-Chr16:26502338 Blo17g00195 Blo-Chr17:1969855 1.41E-18 dispersed
Blo16g01076 Blo-Chr16:39307013 Blo17g00195 Blo-Chr17:1969855 1.03E-15 dispersed
Blo17g00195 Blo-Chr17:1969855 Blo11g00620 Blo-Chr11:6332663 1.45E-45 dispersed
Blo17g00195 Blo-Chr17:1969855 Blo18g00197 Blo-Chr18:1927631 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00195 Blo_Chr17 FPKM 8.237432 8.286475 29.369331 27.613756 6.357573 6.798924 6.481678 2.16733 2.680296 2.236191