Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00217 ATGACGGAGAATGAGTTTGGTATCAGGCTAGGAAACCCAAACTGGAAAATGACCGTGGCTGCAACATTGCCAAGTGTGGCGTCGTGGCGGCAAGGACTCAACTCAGAAGTTCGAATTGCAGCCAAGACACAGAAACCGAGTTTGCCAAATTTTGTGCTGTGTAGGATTTTCGATCTTTTACGGAAGCTTGGGCTTCCATTACGAAAGTCTGCACTTCTGTGGAAAGACAGGTGTCCCTCGCTCCATTCGGACACATATGCTTTGCGGAAATCCAACCTTCCGTTGCTTATAGCGATCTTAGTCGGTGGTGGCATTTCGGTGAATCTTTCACATGGAATGGCAGGCCTTGCTAGCTACAGAAATCCTGACCGTGAAATCGAGCAGGATGAATCTTCTTTGATTTGGATATCTAGTAGGGGTGAAAGACGCTTGAAACTAGCTTCCATCTCTCGAATCATTCCTGGACAAAGAACTGCTGTCTTTGAACGATATTTGCGTCCTGAAAAAGATTACTTGTCTTTCTCTCTTATCTACAATAACGGCAAGCGTTCTCTTGATCTGATTTGCAAAGATAAAGTTGAGGCAGAGGTCTGGATTGCAGGCCTTAAAGCGTTAATAGCATCTGGTCAAGGTGGTCGTTCGAAAATTGATGGATGGAATGATGGTGGCCTCTATCTCGACGAAAGCAGTGATTTGACTTCAAATAGCCAGAGCGACAGTTCCAACAGTGCAACTAGAGATCTTTGTTCATCTGAGGTTTCTTCCAATCTTAGCCAGAATATATCTCCAAAGAGGTTTTGGCCTGACAATTCTGGACAATCAGAAAGGTTAAATGTAGCATTAAACCAACCTAACATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGCGTTTCAAGTGCCCCCAGCACCTCAAGTCATGGTTCTACACCAGATGATTATGATGCTCTGGGTGATGTATACATATGGGGTGAAGTTATTAGTGATAATGTGGTCAAGGTTGGGGCTGACAAAAGTACCAATTATGTAACCTTAACAACAGATGTGCTTCTTCCCAAGCCACTAGAGTCTAATGTAGTATTGGACATTCATCATATATCCTGTGGGGTTATGCATTCTGCTCTTGTCACAAGGCAAGGTGAAGTCTTTACGTGGGGAGAGGAATCTGGAGGGAGGCTTGGCCATGGTGTGGGAAAGAATATTATTCGGCCTTGTATTGTTGAATCATTAGCAGCCACTAGTGTTGATTTTGTTTCTTGTGGGGAGTTCCATACTTGTGCTGTTACAATGGCCGGGGAACTTTATACCTGGGGAGATGGCACACATTATGCTGGCCTTCTTGGTCATGGCAGTGATGTCAGCCATTGGATACCAAAGAGGGTTTCAGGTGCTCTTGAAGGACTTCAAATTGCTTCAGTGACGTGTGGACCTTGGCATACAGCCTTGATAACATCAATGGGACAGCTCTTTACATTTGGTGTTGGAACATTTGGTGTATTGGGTCATGGAGACAGAGAAAGTGTTTCATACCCTAGAGAAGTAGAATCTTTATCAGGCTTAAAGACAATTGCCGTTGCATGCGGGGTGTGGCATACTGCTGCCGTTGTTGAAGTTATTGTGACACAATCTAGTTCCAGTGTTTCATCAGGGAAGTTATTTACTTGGGGTGATGGAGATAAGAATCGCCTAGGGCATGGAGATAAAGATCCCCGGCTTAAACCAACCTGTGTACCTTCATTAATTGATTATAATTTTCACAAAATTTCTTGTGGCCACAGTTTAACTGTTGGCTTAACCACGTCAGGACAAGTTTTTACTATGGGGAGTCCTGTTTACGGTCAGCTTGGGAATCCTATTGCTGATGGGAAGCTACCATGCTTGGTAAAAGATAAGCTTGCAGAAGAATCCATTGAAGAAGTTGCATGTGGTGCATATCATGTTGCAGTACTAACTTGTAGAAATGAAGTTTATACGTGGGGAAAGGGTGCAAATGGAAGATTGGGTCATGGAGATGTTGAAGATCGAAAAATGCCCACTTTGGTTGAATGTTTGAAAGATAGACATGTCAAATATATTTCTTGTGGTTCTAGCTATATGGCAGCCATTTGTCTTCATAAATGGGTTTCAGGTGCCGAGCAGTCACAGTGTTCTGCTTGTAGACAGACCTTTGGATTTACTCGAAAAAGGCACAACTGCTATAATTGTGGGTTTGTGCACTGCCATTCATGCAGTTCCAGAAGAGCATTGAGAGCTGCACTGGGTCCTAATCCTGCTAAAGCATATCGCGTCTGTGACTCTTGTTATTCAAAATTGAATAACGTGTCTGAAGTTAGTAATAATATTAGGAAAAATGCAATACCTCGCCTTTCAGGTGTGAACAAGGAAAGATTGGAGAAGATTGAGCATAAGGTGGGTGATTCTATGCCTTCCAATATGGATTTAATAAAGCAATTAGATAGCAAAGCAGCCAAACAAGGAAGGAAGCCAGATACATACTCCCTCGTTCGTGCCTCTCAAGGACCTTCCTTGGTGCAGCATAAAGATGTAGTTTTTCCCATGGCTATTGATTTACGACGAATGGCTCCCAAGCCTATTCTTACGGCGCATGGAGTAAGTTCTAGGTCCATGTCACCTCTCTCAAAGAGAAGTCCTCCTCGATCGGCTACTCCTGTTCCTACAGCATCGGGACTTTCTTTCTCCAATAGTGTTTCTGATAGCTTGAAGAGAACAAATGAACTTTTGAATCACGAAGTGTCAAGGTTACGAGCACAGGTGGAGAGCCTGAGCCAGAGATATGAGCTCCAGGAACTAGAGCTTCAAAGATCGATGAAAAAGGCACAAGAAGCACAGGCTTTAGCGGCAGATGAATCTGCTAAATCTAAAACTGCAAAAGAAGTCATTAAATCACTTTCAACTCAGCTCAAGGATATGGCAGAGAGGTTACCTGCTGGAGTTAACGAAACTGAGGACGTGAGGCCAGCACATCCTCCCAAGGGTTTGGAACGAAATGGTATCCTCTATTTGGAAACAAATGGAAAGCGCTATTCAAGATATGATTCCATTAGCTGCTTTGCATTGGATTCTCCCTCATCTATAGACACCAACGCATGGCAAGGAAGTCAAGGCTTAGCCACTTCACCAAGAGATAGCAGTGAAGTCAATCTTGAACAAGAGCAAAAGTTGCTGCCCTCCAATGGGATTGAGGGTCGTAAAGATTTTAGATTGCCGGATGGTGGACAAGTTCAAGCGAGTGGCGGAAGTAGCATACTGGAGGAACTCGATGGTCACTCTGAACCCACCAGCGATAATTTGAAATCCAGGATTTCTACTTTGGCTACAAATGGTAATCAAGTTGAGGCAGAATGGATTGAACAATTCGAACCCGGTGTGTATGTTACTCTCGTCGCATTGCAAGATGGAGCGAGAGATATTAAAAGAGTGCGCTTCAGCCGAAGACGATTTGAGGAGCGTCAAGCGGAGAATTGGTGGGCAGAAAACCGGGAGAGGGTGTATGGGAAATACAGCATTCGTGGGACTGACAAGTCTTCGGTTTCAAGTCCAGCCGGCCGGAGATCAGAGGGTGGAGCTGTCTCACCCTCTTCCCAACAACCTTTGCAAACGAGGAAAGTCACTTCTATCTCTGCTGACTAA 3657 44.19 MTENEFGIRLGNPNWKMTVAATLPSVASWRQGLNSEVRIAAKTQKPSLPNFVLCRIFDLLRKLGLPLRKSALLWKDRCPSLHSDTYALRKSNLPLLIAILVGGGISVNLSHGMAGLASYRNPDREIEQDESSLIWISSRGERRLKLASISRIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALIASGQGGRSKIDGWNDGGLYLDESSDLTSNSQSDSSNSATRDLCSSEVSSNLSQNISPKRFWPDNSGQSERLNVALNQPNMQVKGSGSDAFRVSVSSAPSTSSHGSTPDDYDALGDVYIWGEVISDNVVKVGADKSTNYVTLTTDVLLPKPLESNVVLDIHHISCGVMHSALVTRQGEVFTWGEESGGRLGHGVGKNIIRPCIVESLAATSVDFVSCGEFHTCAVTMAGELYTWGDGTHYAGLLGHGSDVSHWIPKRVSGALEGLQIASVTCGPWHTALITSMGQLFTFGVGTFGVLGHGDRESVSYPREVESLSGLKTIAVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPSLIDYNFHKISCGHSLTVGLTTSGQVFTMGSPVYGQLGNPIADGKLPCLVKDKLAEESIEEVACGAYHVAVLTCRNEVYTWGKGANGRLGHGDVEDRKMPTLVECLKDRHVKYISCGSSYMAAICLHKWVSGAEQSQCSACRQTFGFTRKRHNCYNCGFVHCHSCSSRRALRAALGPNPAKAYRVCDSCYSKLNNVSEVSNNIRKNAIPRLSGVNKERLEKIEHKVGDSMPSNMDLIKQLDSKAAKQGRKPDTYSLVRASQGPSLVQHKDVVFPMAIDLRRMAPKPILTAHGVSSRSMSPLSKRSPPRSATPVPTASGLSFSNSVSDSLKRTNELLNHEVSRLRAQVESLSQRYELQELELQRSMKKAQEAQALAADESAKSKTAKEVIKSLSTQLKDMAERLPAGVNETEDVRPAHPPKGLERNGILYLETNGKRYSRYDSISCFALDSPSSIDTNAWQGSQGLATSPRDSSEVNLEQEQKLLPSNGIEGRKDFRLPDGGQVQASGGSSILEELDGHSEPTSDNLKSRISTLATNGNQVEAEWIEQFEPGVYVTLVALQDGARDIKRVRFSRRRFEERQAENWWAENRERVYGKYSIRGTDKSSVSSPAGRRSEGGAVSPSSQQPLQTRKVTSISAD 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2230136 2239834 - BLOR16038 Blo17g00217 72605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00217 1218 Gene3D - 124 212 IPR011993 -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 552 603 IPR000408 -
Blo17g00217 1218 SUPERFAMILY FYVE/PHD zinc finger 708 784 IPR011011 -
Blo17g00217 1218 Gene3D - 543 712 IPR009091 -
Blo17g00217 1218 MobiDBLite consensus disorder prediction 870 905 - -
Blo17g00217 1218 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 126 1184 - -
Blo17g00217 1218 CDD FYVE_like_SF 717 770 - -
Blo17g00217 1218 Pfam FYVE zinc finger 708 774 IPR000306 GO:0046872
Blo17g00217 1218 MobiDBLite consensus disorder prediction 1180 1218 - -
Blo17g00217 1218 Gene3D - 269 542 IPR009091 -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 433 IPR000408 -
Blo17g00217 1218 MobiDBLite consensus disorder prediction 1067 1087 - -
Blo17g00217 1218 Pfam Transcription factor BRX N-terminal domain 957 991 IPR027988 -
Blo17g00217 1218 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 527 537 IPR000408 -
Blo17g00217 1218 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 126 1184 - -
Blo17g00217 1218 Pfam Transcription factor regulating root and shoot growth via Pin3 1121 1176 IPR013591 -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 656 707 IPR000408 -
Blo17g00217 1218 MobiDBLite consensus disorder prediction 872 905 - -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 604 655 IPR000408 -
Blo17g00217 1218 MobiDBLite consensus disorder prediction 1176 1218 - -
Blo17g00217 1218 SMART fyve_4 706 775 IPR000306 GO:0046872
Blo17g00217 1218 MobiDBLite consensus disorder prediction 230 249 - -
Blo17g00217 1218 SUPERFAMILY PH domain-like 129 206 - -
Blo17g00217 1218 Pfam Regulator of chromosome condensation (RCC1) repeat 551 598 IPR000408 -
Blo17g00217 1218 Pfam Regulator of chromosome condensation (RCC1) repeat 382 430 IPR000408 -
Blo17g00217 1218 Pfam Regulator of chromosome condensation (RCC1) repeat 434 485 IPR000408 -
Blo17g00217 1218 Pfam Regulator of chromosome condensation (RCC1) repeat 603 652 IPR000408 -
Blo17g00217 1218 Pfam Regulator of chromosome condensation (RCC1) repeat 489 537 IPR000408 -
Blo17g00217 1218 Pfam Regulator of chromosome condensation (RCC1) repeat 657 704 IPR000408 -
Blo17g00217 1218 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 712 774 IPR017455 -
Blo17g00217 1218 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 381 IPR000408 -
Blo17g00217 1218 ProSiteProfiles BRX domain profile. 1122 1177 IPR013591 -
Blo17g00217 1218 MobiDBLite consensus disorder prediction 290 313 - -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 489 540 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 434 450 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 593 611 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 491 505 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 475 491 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 651 672 IPR000408 -
Blo17g00217 1218 PRINTS Chromosome condensation regulator RCC1 signature 365 378 IPR000408 -
Blo17g00217 1218 Coils Coil 906 954 - -
Blo17g00217 1218 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 488 IPR000408 -
Blo17g00217 1218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 713 784 IPR013083 -
Blo17g00217 1218 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 368 378 IPR000408 -
Blo17g00217 1218 SUPERFAMILY RCC1/BLIP-II 319 709 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00217 - - - zju:107435717 1568.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g01105 Blo17g00217 CCT
Blo01g01332 Blo17g00217 CCT
Blo17g00217 Blo18g00216 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00217 Blo-Chr17:2230136 Blo18g00489 Blo-Chr18:5921309 0 dispersed
Blo17g00217 Blo-Chr17:2230136 Blo18g00216 Blo-Chr18:2122330 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00217 Blo_Chr17 FPKM 0.320988 0.434183 0.0 0.246621 0.0 0.959401 0.0 0.0 0.0 0.240087