Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00218 ATGCAATTGCATGTAGGAGGCCGTTTAAACTCGTCATCTTGTCTTCTTGTCCCTCCATGGAAGAAGGTAAGGAACAGAGGTGGGTGCGAGGTCGAGAGAAAGTCAGCCATGGAAACCAGACTCTCTGCCTCTCTCGGTCTTTCGTCTCATAATCCCAATCACTCCCTTCCCGTTGCTGGTTTCACCTCTATTTTCACCCATTTCAACACCGTCTTAGCTTCTCCAAATTCTAGTCTCGTTGCTGGTGGTTCTAAGAGGCAGAACAATGGAGATAAATTCATCGCCCGCCTTTCATTCGGTTCTGTATCGTTATCATCTGAAGCTCAGATTTCAACATCCGAGTCCTCTAACTGGATCAAACCCTCCTCCAGAAACAGCCCAAAAGTCCTGTCCTTATCAGTCTTGGAACGCGCTCTTATCGGCGCCTTTGGCGGTGGAATTGCCGGTGCTTTCACCCATGTCTGTTTGCACCCTCTCGATACCATAAAAACGAAGCTTCAGACAAAGGGGGCGGCTGAAATTTATAAGAACACATTCGACGCCATTGCCAAAACCTTCAAATCCAAAGGCATAATCGGATTTTACAGCGGAATCTCTGCAGTCATCGTTGGCTCTACTGCTTCGTCAGCTGTTTATTTCGGGACATGCGAGTTCGGGCAATCAATTTTATCGCAATTCGACAACTACCCATCATTTCTAATCCCTCCGACAGCCGGGGCGATGGGAAACATGTTCTCGTCGGCGATTATGGTGCCGAAAGAGTTGATCACCCAGCGAATGCAAGCGGGAGCTAAAGGCAAGTCTTGGGAAGTTTTGCTAAAGATTCTGGAGAAAGATGGCGTTCTGGGTTTATACGCAGGATATTCTGCGACATTGCTGAGGAATTTACCTGCCGGAGTATTGAACTACTCGTCGTTCGAATACCTAAAAGCTGCCGTTTTGAGCAGGACGAAACAGAACCAGTTAGACCCCTTCCAGAGCGTCTGTTGCGGCGCACTGGCCGGCGCGATAGCTGCTTCTCTCACGACTCCTCTTGATGTTGTCAAGACTCGGTTAATGACTCAGGTTCATGGGGAGGCCATGAATAAGTTATCTGCGGCGACGTACAGTGGGGTTTCGGCTACTCTCATACGAATACTGAAGGAAGAAGGGTTGGCTGGATTTAGCCATGGAATGGGTCCTCGAGTTCTTCATGGCTCCTGTTTCTCTGCGTTGGGTTTTCTCGCATTCGAGACTGCTAGAGTTTCAATTTTGCACCATCATCTCAAGCGAAAGGAGTTAGCTCTCGCCTGA 1293 48.65 MQLHVGGRLNSSSCLLVPPWKKVRNRGGCEVERKSAMETRLSASLGLSSHNPNHSLPVAGFTSIFTHFNTVLASPNSSLVAGGSKRQNNGDKFIARLSFGSVSLSSEAQISTSESSNWIKPSSRNSPKVLSLSVLERALIGAFGGGIAGAFTHVCLHPLDTIKTKLQTKGAAEIYKNTFDAIAKTFKSKGIIGFYSGISAVIVGSTASSAVYFGTCEFGQSILSQFDNYPSFLIPPTAGAMGNMFSSAIMVPKELITQRMQAGAKGKSWEVLLKILEKDGVLGLYAGYSATLLRNLPAGVLNYSSFEYLKAAVLSRTKQNQLDPFQSVCCGALAGAIAASLTTPLDVVKTRLMTQVHGEAMNKLSAATYSGVSATLIRILKEEGLAGFSHGMGPRVLHGSCFSALGFLAFETARVSILHHHLKRKELALA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2241950 2243242 + BLOR16039 Blo17g00218 72606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00218 430 PANTHER PROTEIN MITOFERRINLIKE 1, CHLOROPLASTIC 55 425 - -
Blo17g00218 430 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 55 425 - -
Blo17g00218 430 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 312 IPR018108 -
Blo17g00218 430 Pfam Mitochondrial carrier protein 321 417 IPR018108 -
Blo17g00218 430 Pfam Mitochondrial carrier protein 143 223 IPR018108 -
Blo17g00218 430 Pfam Mitochondrial carrier protein 237 313 IPR018108 -
Blo17g00218 430 ProSiteProfiles Solute carrier (Solcar) repeat profile. 136 222 IPR018108 -
Blo17g00218 430 Gene3D Mitochondrial carrier domain 267 428 IPR023395 -
Blo17g00218 430 SUPERFAMILY Mitochondrial carrier 139 411 IPR023395 -
Blo17g00218 430 Gene3D Mitochondrial carrier domain 92 266 IPR023395 -
Blo17g00218 430 ProSiteProfiles Solute carrier (Solcar) repeat profile. 322 416 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00218 K15111 SLC25A26; solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26 - zju:107421682 525.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00218 Blo18g00217 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00218 Blo-Chr17:2241950 Blo19g00317 Blo-Chr19:20543812 8.01E-40 dispersed
Blo16g00502 Blo-Chr16:19958592 Blo17g00218 Blo-Chr17:2241950 2.20E-07 transposed
Blo17g00218 Blo-Chr17:2241950 Blo18g00217 Blo-Chr18:2144376 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00218 Blo_Chr17 FPKM 193.174973 208.244095 175.463242 175.675903 229.118835 244.096085 243.550781 230.240265 237.706329 237.332382