Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00221 ATGGAGCAGGTAAGTGCAGTAAGCGTTGCATACTCACAATCAGAGCTCTTACGGAAAGAAGTATTTTTGGTTGAAATGATAGATGCCATTCCTATGTCAAGAGAATCTATGTCTCATCTGAAAGCTGTCTACTTCATCCGACCCACATCAGAAAATATACAGCATTTGCGGCGCCAGCTACCCAATCCTAGGTTTGGGGAATATCACCTTTATTTTTCCAACATATTGAAGGAGACTCAAGTTCACATGATAGCTGATGCCGATGAACAGGATGTTGTCCAGCAAGTTCAGGTTTTAATTCCGTTTCCTCTGGCTGATGGAATTCAGTCCTTGATATCTTTGGCTTGCATTCTAGATTTTTCCTATGAGCATTTGGCCTGTGAGTTTTATGCAGATTTTGTTGCGGTTGATGGTTATCATTGGGTGCTAAATATTTCATCTAATCATATGTATATGCTTCCAGCAGTTGTAGATCCTCCAAAACTGCAGCATTTTTGTGATCGAGTTGTTGATGGCATTGCAGCCCTTTTCTTGGCCTTCAAGCAAAGACCTATTATTCGATATCAAAGAACCTCTGATATTGCCAAAAGAATAGCACAAGAAACAGCGAAATTGATGTACCAGCAAGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTGTCTCCTTTGTTGCTCGTAATTGATAGAAGGGATGACCCTGTGACTCCTTTACTGAATCAGTGGACGTATCAGGCTATGGTACATGAATTGCTCAATATTGAAGACAATAAAGTTGATTTGAAAAGCATCGGAAAATCCTCAACCGACCAACAGGAGGTTGTGCTATCGTCAGAACAAGATGTGTTTTTCAAAGCTAACATGTATGAGAATTTTGGAGACATTGGGATGAATATCAAGAGGTTGGTGGATGATTTCCAGCAAATAGCAAAGAGTAACCAGAACATTCAGACAATAGAAGACATGGCCAAATTTGTTGACAACTATCCAGAATATAGGAAAATGCAGGGCAATGTTTCAAAACATGTGACATTAGTTACAGAAATGAGTAAAATAGTTGAAGAGCGGAAGCTGATGTTAGTTTCACAAACTGAACAAGACTTGGCTTGCAATGGCGGACAAGTGGCTGCTTTTGAGGCAGTCTCAAATCTTTTAAACGATGAAAGCTTGTCTGATATAGACCGTTTACGTGTAGTGATGCTGTATGCTTTGCGTTATGAAAAGGAGAGTCCTGTTCAACTTATGCAGCTTTTCAACAAACTGGCTTCTAAATCTGCGAAATACAAACCAGGGCTTGTTCAATTCCTGTTGAAACAAGCGGGCGTTGATAAACGAACTGGTGATCTTTATGGAAATCGAGATCTTCTAAATATTGCTCGTAACATGGCTCGTGGATTGAAGGGGGTTGAGAATGTCTACACTCAGCATCAACCTCTTCTGGTACAAACTATGGAAAGCATCAGCAAGGGACGTTTAAGAGATGTGGACTATCCGTTTATTGGGAATCACTATCAGCAGGCCAGCAGGCCTCAGGAGGTTGTCATTTTTATTGTGGGTGGGACGACATATGAGGAGTCACGCGCTGTCGCTCTGCATAATGCCACCAATCCTGGGATTCGTTTTTTTATTGGCGGTTCTGTGGTTCTCAATTCTCAGAGATCAGGGAAGCTATGGCAACTCAACGTAAGTGCTGAAGTCCTGGGAGATTTCAGCTGGCCAATTTTCAGTGCGAGCATTTTTGTGCTTGTTGCACTTGTTCTCTCCACGTTTCTCATCTTTGAGCATTTAGCTGCTTACAATCAGCCTGAGGAGCAGAAGTTTCTGATTGGTCTGATCTTGATGGTTCCTGTTTATGCAGTGGAATCGTATATTAAACTGCCTCTATGGTTATTTTTTTGCTGGCAATCAGACCATGTTGTATACCCAAGCATGGTTTTAAACATTCATGTTGCTAAAGAGAAAGCTTTTTTATCGTTATTGGATTCAAATGCTGCATTCAACTGTGAAGTAATCCGGGATTGCTATGAAGCTTTTGCACTGTATTGCTTTGAGAGATATCTTATAGCATGTTTGGGTGGTGAGGAAAGTACAGTTGAGTTTATGGAAAGCCAGGGTGTAGTTGACTCCACCACTCCTCTTTTAAAAGAAAGATATGCGTATGGTGTTGTGGAACATCCCTTTCCTTTGAATTGCTTTATACAAGATTGGTATCTTGGTCCAAATTTCTACAATGCTGTGAAAATTGGCATTGTACAATATATGATTGTCAAGATGATCTGTGCGCTTTTTGCTATGATTCTTCAAAGTTTTGGGGTTTACGGAGAAGGGAAGTTTGATTGGCGATATGGCTATCCATACTTGGCGGTTGTACTTAATTTTAGTCAGACGTGGGCTTTATATTGTCTTGTACAGTTCTACACAGTCACAAAAGACAAATTGGAGCCAATCAAACCGTTGGCTAAGTTTCTGGTTGTCAAGTCAATTGTTTTCCTGACGTGGTGGCAAGGAATCGCTGTTGCATTCCTATTTTCAATAGGAGCCTTTAGAGGATCTCTCGCTCAAGAGCTGAAAACGCGTATACAGGACTATATAATCTGTATAGAGATGGGTATTGGAGCTGTGGTGCACCTTTATGTCTTCCCTGCTGTACCTTATAAACGGGGAGAAAGATGTGTGCGGAACGTGGCTGTGATGACCGACTATGCATCAGCAGGAACACCTCCAGATCCCGAGGAGGTTAGAGATTGTGAGCGTTCGACTAGAATGCGTTTGGCTCGACCTGACGAGAGGGAAAAGCGTTTAAATTTTCCTCAAAGTGTTCGCGACGTGGTCCTCGGAAGCGGGGAAATTATTGTTGATGACATGAGATATACTGTCTCACACGTAGTAGAGCCAGTCGAAAGGGGGATTGCGAGAATTAACAAGACTTTCCAACAAATATCGGAAAATGTCAAGCGCCACGAAGAGCGGAGGAGGAGGAGCATCAAGGACGATAGTTATCTCATCCCCATGAATTCATGGACAAGAGAATTCCCAGAAGATAATGCAGTTGTCGAAGGCAGTGTGAGCGACAGTGGGTTATCGAGCCGAAAGCGACTGCACCCTCAATCCAAACCCTCGGCCCCGTTGACCGCATCGAGAGCAACTACAACACGAAGATAA 3162 42.22 MEQVSAVSVAYSQSELLRKEVFLVEMIDAIPMSRESMSHLKAVYFIRPTSENIQHLRRQLPNPRFGEYHLYFSNILKETQVHMIADADEQDVVQQVQVLIPFPLADGIQSLISLACILDFSYEHLACEFYADFVAVDGYHWVLNISSNHMYMLPAVVDPPKLQHFCDRVVDGIAALFLAFKQRPIIRYQRTSDIAKRIAQETAKLMYQQESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELLNIEDNKVDLKSIGKSSTDQQEVVLSSEQDVFFKANMYENFGDIGMNIKRLVDDFQQIAKSNQNIQTIEDMAKFVDNYPEYRKMQGNVSKHVTLVTEMSKIVEERKLMLVSQTEQDLACNGGQVAAFEAVSNLLNDESLSDIDRLRVVMLYALRYEKESPVQLMQLFNKLASKSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLVQTMESISKGRLRDVDYPFIGNHYQQASRPQEVVIFIVGGTTYEESRAVALHNATNPGIRFFIGGSVVLNSQRSGKLWQLNVSAEVLGDFSWPIFSASIFVLVALVLSTFLIFEHLAAYNQPEEQKFLIGLILMVPVYAVESYIKLPLWLFFCWQSDHVVYPSMVLNIHVAKEKAFLSLLDSNAAFNCEVIRDCYEAFALYCFERYLIACLGGEESTVEFMESQGVVDSTTPLLKERYAYGVVEHPFPLNCFIQDWYLGPNFYNAVKIGIVQYMIVKMICALFAMILQSFGVYGEGKFDWRYGYPYLAVVLNFSQTWALYCLVQFYTVTKDKLEPIKPLAKFLVVKSIVFLTWWQGIAVAFLFSIGAFRGSLAQELKTRIQDYIICIEMGIGAVVHLYVFPAVPYKRGERCVRNVAVMTDYASAGTPPDPEEVRDCERSTRMRLARPDEREKRLNFPQSVRDVVLGSGEIIVDDMRYTVSHVVEPVERGIARINKTFQQISENVKRHEERRRRSIKDDSYLIPMNSWTREFPEDNAVVEGSVSDSGLSSRKRLHPQSKPSAPLTASRATTTRR 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2270128 2282583 - BLOR16042 Blo17g00221 72609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00221 1053 Coils Coil 970 990 - -
Blo17g00221 1053 Pfam Organic solute transporter Ostalpha 575 626 IPR005178 -
Blo17g00221 1053 Pfam Organic solute transporter Ostalpha 655 885 IPR005178 -
Blo17g00221 1053 Gene3D - 2 100 IPR043154 -
Blo17g00221 1053 Gene3D - 158 553 IPR027482 -
Blo17g00221 1053 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 557 626 IPR005178 -
Blo17g00221 1053 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 644 1032 IPR005178 -
Blo17g00221 1053 SUPERFAMILY Sec1/munc18-like (SM) proteins 5 552 IPR036045 -
Blo17g00221 1053 MobiDBLite consensus disorder prediction 1018 1053 - -
Blo17g00221 1053 MobiDBLite consensus disorder prediction 1021 1053 - -
Blo17g00221 1053 Gene3D - 356 477 - -
Blo17g00221 1053 PANTHER ORGANIC SOLUTE TRANSPORTER SUBUNIT ALPHA-RELATED 644 1032 - -
Blo17g00221 1053 PANTHER ORGANIC SOLUTE TRANSPORTER SUBUNIT ALPHA-RELATED 557 626 - -
Blo17g00221 1053 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 241 354 IPR043127 -
Blo17g00221 1053 Pfam Sec1 family 7 553 IPR001619 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00221 K12479 VPS45; vacuolar protein sorting-associated protein 45 - jre:109005399 879.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00063 Blo-Chr4:536290 Blo17g00221 Blo-Chr17:2270128 2.56E-06 dispersed
Blo17g00221 Blo-Chr17:2270128 Blo06g01049 Blo-Chr6:33842097 1.04E-27 dispersed
Blo03g00392 Blo-Chr3:9762303 Blo17g00221 Blo-Chr17:2270128 1.90E-18 transposed
Blo07g00938 Blo-Chr7:28645320 Blo17g00221 Blo-Chr17:2270128 7.51E-25 transposed
Blo11g00303 Blo-Chr11:2452810 Blo17g00221 Blo-Chr17:2270128 3.06E-29 transposed
Blo13g00478 Blo-Chr13:25679192 Blo17g00221 Blo-Chr17:2270128 1.75E-159 transposed
Blo16g00953 Blo-Chr16:37800220 Blo17g00221 Blo-Chr17:2270128 1.03E-95 transposed
Blo17g00221 Blo-Chr17:2270128 Blo18g00220 Blo-Chr18:2170425 1.05E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1219 . . . . . . . . Cmo04g02542 Cmo15g00629 . . . . Sed01g3642 . Cpe13g00665 Bhi04g01816 Tan11g1186 Cmetu03g0425 . Hepe02g2770 . Lcy10g1316 . . . . . . . . . Cone17ag0798 Cone20ag0397 . . . Cme03g00395 Blo17g00221 . . Bda13g01531 . Bpe14g00330 . Bma02g00280 . . . . . Car04g02340 Car15g00571 Cpe01g02102 . . . . . . . . . . . . . . . Lsi08g00525 . Chy03g00589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00221 Blo_Chr17 FPKM 9.105151 9.61289 70.430367 67.657539 11.457132 12.843417 11.74929 75.189896 73.478683 72.591179