Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00228 ATGGTTCAGGTACTGCCTGTGCAAGTTAGCTCCAAAGCGGAACTCAAGCGCAAGGAGAAGCAGCAGAAGAAGGCCAAGTCTGGTGGATTTGAGTCCTTAGGGCTGAGTCCGGATGTCTTCAGAGGAATCAAACGCAAGGGCTACAGAGTTCCTACCCCGATACAGAGGAAGACCATGCCTATTATCCTGTCCGGTGCAGACGTCGTGGCCATGGCTCGAACTGGCTCTGGTAAGACTGCCGCATTTCTTATCCCCATGTTGGAGCGCTTGAAGCAGCATGTGCCGCAGAGTGGTGTTAGAGCTGTCATCTTATCTCCCACCAGAGATTTGGCTATTCAAACACTCAAGTTTGCTACTGAACTTGGCAGATTTACTGATCTTCGAATAAGTTTGCTGGTTGGTGGGGACAGCATGGAAAGTCAGTTTGAAGAATTATCTCAGAATCCGGATATCATTATTGCTACTCCAGGCAGGCTTATGCATCATTTGTCTGAAGTTGATGACATGTCATTACGAACAGTGGAATATGTGGTTTTTGATGAGGCAGATTGTCTTTTTGGTATGGGTTTTGCTGAGCAGTTGCATCAAATCCTCTCACAGTTGAGTGAGAATCGCCAGACCTTACTCTTTAGTGCAACCCTACCAAGTGCTCTTGCTGAGTTTGCCAAGGCAGGTTTGCGAGACCCTAAGCTCGTGCGGCTTGATTTGGAAAACAAGATCAGCCCTGACTTGAAGCTTACTTTTTTTACCTTAAGGCATGAAGAAAAACATGCTGCATTACTTTATTTGGTAAGGGAGCATATAGGTATTGATGAGCAGACATTAATTTTTGTATCTACAAAACATCATGTGGAGTTTCTCAATATGTTATGTAGAGAGGAGGGTATTGAACCTTCTGTCTGTTATGGTGACATGGACCAAGATGCTCGCAAAATTCATGTATCAAAGTTTAGGGCTAGAAAAACTATGTTGTTAATAGTGACAGATGTTGCAGCTAGGGGTATTGACATTCCATTGCTTGATAATGTGATCAATTGGGACTTTCCTCCGAAGCCTAAAATCTTTGTTCATCGAGTTGGACGAGTTGCAAGGTGTGGTCGCACTGGTACTGCCTTTTCTTTTGTGACATCTGAAGATCTGCCTTACCTATTAGACCTTCATCTTTTTCTCTCAAAACCAATTAGGCCTGCCCCCACTGGGGAAGAGGTTTTGCAGGATGTGGATGGAGTGATGTCAAAAATTGATCAAGCAACAGCTAATGGAGAAACTGTTTATGGGCGTTTTCCTCAGGAGTTTATCGATCTCGCTGCAGATAGAATACGGGAAATTATTGATTCTTCTGCAGAATTGAGTTCATTACAGGGAACATGTGTAAATGCATTTCGCTTATATTCAAAGACAAAACCCTTGCCTTCAAAAGAGTCCATCAGAAGATCCAAAGACTTGGTTCGCGAAGGGCTTCATCCAATCTTTAAAAATGTAATGGAAGGTGGGCAATTAAGGGCATTGGCTTTTTCTGAGCGATTGAAAACGTTTAGACCCAAGCAGACAATTTTGGAAGCTGAAGGTGATGCTGCTAAATCAAAGCATCGGCAGGGCCCTTCCAGTCAATGGGTTGATGTGATGAAAAGAAAGAGAGCTATTCATGAGGAAGTCATTAACTTGGTACAGCAACAACGTTCTTGCAATCACGCCGAAAAGGAAGTCCTTCCTGAAACCACTTCATTGCCAGCTAAGAAAGCAAAAGATAGTCGTGGGTTGAAAAGAAAGTCATTGATTTTTAAAGATGAGGAGTTCTATATAAGTTCAGTGCCTACGAACCATCATATGGAAGCAGGACTCTCAGTACGAGGTGATCAAGGTTTTGGATCAAACAGGTTAGAAAATGCTGTTCTAGATTTAGTTGGAGATGATAGCACCAGCATGCAGAAACAGAAATCTGTATATCATTGGGATAAGAGGGGTAAGAAGTACATCAAGTTAAATAATGGCGAGCGGGTAACAGCTAGTGGAAAGATAAAGACAGAGAGTGGAGCAAAAGTTAAAGCTAACAATACTGGAATATACAAGAAATGGAAAGAGCGCTCACACACCAAAATATCTCTCAAGGGAACTGATAGTGAAGGACATGCTGATAAATCCACAAGCTTTGCAGGAAAACAGCATTTTTCAAGAGGAAATAGAAACTTTAGGAACGGCAAGAGGCAACATTCAGTGCCCAATGCTAATGTGCGTTCAGAAGTTAAAGGTCTTGAACAAATCCGGAAGGAAAGGCAGAAGAAGGCAAATAAAAAATCTCACATGAAGAATTCTTCAAAGGGGAGAAAGGGCAAAGGAACGAGGGGAAGAGCCAAAAAGTAG 2361 42.65 MVQVLPVQVSSKAELKRKEKQQKKAKSGGFESLGLSPDVFRGIKRKGYRVPTPIQRKTMPIILSGADVVAMARTGSGKTAAFLIPMLERLKQHVPQSGVRAVILSPTRDLAIQTLKFATELGRFTDLRISLLVGGDSMESQFEELSQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHQILSQLSENRQTLLFSATLPSALAEFAKAGLRDPKLVRLDLENKISPDLKLTFFTLRHEEKHAALLYLVREHIGIDEQTLIFVSTKHHVEFLNMLCREEGIEPSVCYGDMDQDARKIHVSKFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARCGRTGTAFSFVTSEDLPYLLDLHLFLSKPIRPAPTGEEVLQDVDGVMSKIDQATANGETVYGRFPQEFIDLAADRIREIIDSSAELSSLQGTCVNAFRLYSKTKPLPSKESIRRSKDLVREGLHPIFKNVMEGGQLRALAFSERLKTFRPKQTILEAEGDAAKSKHRQGPSSQWVDVMKRKRAIHEEVINLVQQQRSCNHAEKEVLPETTSLPAKKAKDSRGLKRKSLIFKDEEFYISSVPTNHHMEAGLSVRGDQGFGSNRLENAVLDLVGDDSTSMQKQKSVYHWDKRGKKYIKLNNGERVTASGKIKTESGAKVKANNTGIYKKWKERSHTKISLKGTDSEGHADKSTSFAGKQHFSRGNRNFRNGKRQHSVPNANVRSEVKGLEQIRKERQKKANKKSHMKNSSKGRKGKGTRGRAKK 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2336938 2342670 + BLOR16049 Blo17g00228 72616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00228 786 MobiDBLite consensus disorder prediction 760 786 - -
Blo17g00228 786 SMART ultradead3 47 249 IPR014001 -
Blo17g00228 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 233 IPR027417 -
Blo17g00228 786 Gene3D - 6 233 IPR027417 -
Blo17g00228 786 Pfam DBP10CT (NUC160) domain 633 694 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Blo17g00228 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 59 232 IPR014001 -
Blo17g00228 786 SMART DBP10CT_2 633 695 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Blo17g00228 786 CDD DEADc_DDX54 28 233 - -
Blo17g00228 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 387 IPR027417 -
Blo17g00228 786 Gene3D - 234 399 IPR027417 -
Blo17g00228 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 405 IPR001650 -
Blo17g00228 786 SMART helicmild6 285 366 IPR001650 -
Blo17g00228 786 Pfam DEAD/DEAH box helicase 52 219 IPR011545 GO:0003676|GO:0005524
Blo17g00228 786 Coils Coil 751 771 - -
Blo17g00228 786 CDD SF2_C_DEAD 248 375 - -
Blo17g00228 786 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 28 56 IPR014014 GO:0003724
Blo17g00228 786 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 779 - -
Blo17g00228 786 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 7 779 - -
Blo17g00228 786 MobiDBLite consensus disorder prediction 700 786 - -
Blo17g00228 786 MobiDBLite consensus disorder prediction 700 715 - -
Blo17g00228 786 Pfam Helicase conserved C-terminal domain 256 366 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00228 K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] - pvy:116117241 1231.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00228 Blo-Chr17:2336938 Blo02g00460 Blo-Chr2:6543752 1.09E-62 dispersed
Blo17g00228 Blo-Chr17:2336938 Blo06g00652 Blo-Chr6:29515819 1.54E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1179 . . . . . . Bma04g00302 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1487 . . . . . . Blo17g00228 . . Bda13g01542 . Bpe14g00323 . Bma02g00286 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00228 Blo_Chr17 FPKM 6.076845 7.243855 23.129528 21.281307 13.433682 13.551973 13.471232 31.348034 31.814655 32.403473