Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00230 ATGCTGAGTTTCCCCCCATTGCCTATAGGGTGCCCTAGTCTCCTAACTCGAGACATGAGTAAGAAAGATGTAACAGTAAGTAAAGAACGATTGATGTCTACTTGTGGTGTAGGTGATTCTAACGAGTTTGTTGATCCGGGAGCGGAAGAGGAAGCGTTCCCCGTGGAGGAGGCGAGTTATCCGGCGAAAGTTTCAGTAGACAACACTAGTTGCAGCGATTGCACTCTTGTCAAGGTTGACAGCATGAACAAACCAGGAATTCTTCTGGAAGTGGTCCAATTTCTGTCTGACCTTGACCTCATTATTACCAAAGCTTACATCTCCTCCGATGGCGGATGGTTCATGGATGTTTTTCATGTGACTGATCAGCAGGGAAAGAAGATCATCGATGGAAAAACCATTGACTACATCGAGAAGGCTTTAGGACCAAAGGGTCATACCAAAGATGGAGGAAAGACTTGGCCAGGGAAGAGGGTCGGAGTCCATTCGATCGGCGATCACACTGCCATCGAACTAACCGGTAGAGATCGGCCAGGTCTCTTATCAGAAATATCAGCCGTCCTTACCAACCTCCATTTCAACGTAGTCGCCGCAGAAGTTTGGACACATAATAGGCGTATAGCATGTGTCCTTTACGTTAACGATGATGCCACAAGTCGGGCCGTCAACGATCCAATCAGGCTATCGATAATGGAGGAGCAGCTGAAAAACATCCTCCGCGTATGTGAGGACGACGAGAATGTGGCCCACACCAGCTTCTCGGTGGGGCTAACTCACGTCGATCGACGGCTGCATCAGATGTTATTTGCTGATCGGGATTATGAAGGTGGTTTAATGACTGACATGGACTATCCTCCTTCGATTAGACCGAAGATAACGATTGAGCATTGCGAAGAGAAAGGATATTCGGTTGTCAATGTTCAATGCAAAGACAGAGCCAAATTGTTGTTCGACATTGTCTGCACCTTGACTGACATGCAATATGTTGTTTTTCACGCTTCGATCTCGTCGGATGGCCCCAACGCTTCGCAGGAGTACTATATTCGACACATGGATGGTTGCACCCTCGATACTCAAGGAGAGAAAGAAAGGGTCGTCAAATGTCTCGAAGCCGCAATTCGAAGAAGAGTTAGTGAGGGGGTGAGCTTGGAGCTATGTGCCAAGGATCGAGTAGGTTTGCTATCGCAAGTAACACGAATACTAAGAGAGAACGGATTAACCGTCACAAGAGCCGGCGTCTCTACCGTGGGGGAGCAGGCGATGAGCGTGTTCTACGTCCGGGACGCGTCCGGCAATCCAGTGGACATGAAAACAGTGGAAGCACTTCGGAAGGAAATAGGACACACAATGATGTTGAATGTGAAAAAAGTGCCTCAAAATGCCAAGCCTGCAGAGGCTAATTCCAATAATGGATGGGCCAAAACCAGTTTCTTCTTTGGAAACTTACTGGAAAGGTTTTTGGCTTGA 1467 47.72 MLSFPPLPIGCPSLLTRDMSKKDVTVSKERLMSTCGVGDSNEFVDPGAEEEAFPVEEASYPAKVSVDNTSCSDCTLVKVDSMNKPGILLEVVQFLSDLDLIITKAYISSDGGWFMDVFHVTDQQGKKIIDGKTIDYIEKALGPKGHTKDGGKTWPGKRVGVHSIGDHTAIELTGRDRPGLLSEISAVLTNLHFNVVAAEVWTHNRRIACVLYVNDDATSRAVNDPIRLSIMEEQLKNILRVCEDDENVAHTSFSVGLTHVDRRLHQMLFADRDYEGGLMTDMDYPPSIRPKITIEHCEEKGYSVVNVQCKDRAKLLFDIVCTLTDMQYVVFHASISSDGPNASQEYYIRHMDGCTLDTQGEKERVVKCLEAAIRRRVSEGVSLELCAKDRVGLLSQVTRILRENGLTVTRAGVSTVGEQAMSVFYVRDASGNPVDMKTVEALRKEIGHTMMLNVKKVPQNAKPAEANSNNGWAKTSFFFGNLLERFLA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2345996 2351055 - BLOR16051 Blo17g00230 72618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00230 488 CDD ACT_ACR_3 302 376 - -
Blo17g00230 488 Gene3D - 167 249 - -
Blo17g00230 488 SUPERFAMILY ACT-like 164 243 IPR045865 -
Blo17g00230 488 Gene3D - 377 458 - -
Blo17g00230 488 CDD ACT_ACR_1 74 145 - -
Blo17g00230 488 Pfam ACT domain 169 239 IPR002912 -
Blo17g00230 488 Pfam ACT domain 76 124 IPR002912 -
Blo17g00230 488 Pfam ACT domain 382 442 IPR002912 -
Blo17g00230 488 ProSiteProfiles ACT domain profile. 76 155 IPR002912 -
Blo17g00230 488 CDD ACT_ACR_2 168 240 - -
Blo17g00230 488 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 60 487 IPR040217 -
Blo17g00230 488 ProSiteProfiles ACT domain profile. 382 459 IPR002912 -
Blo17g00230 488 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR3 60 487 - -
Blo17g00230 488 CDD ACT_ACR_4 380 451 - -
Blo17g00230 488 SUPERFAMILY ACT-like 71 146 IPR045865 -
Blo17g00230 488 ProSiteProfiles ACT domain profile. 169 250 IPR002912 -
Blo17g00230 488 SUPERFAMILY ACT-like 378 447 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00230 - - - tcc:18592469 728.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00400 Blo-Chr10:6832733 Blo17g00230 Blo-Chr17:2345996 5.59E-112 dispersed
Blo11g00801 Blo-Chr11:12495951 Blo17g00230 Blo-Chr17:2345996 2.54E-147 dispersed
Blo12g01071 Blo-Chr12:28449447 Blo17g00230 Blo-Chr17:2345996 2.23E-125 dispersed
Blo17g00230 Blo-Chr17:2345996 Blo19g00283 Blo-Chr19:17302261 1.56E-130 dispersed
Blo17g00230 Blo-Chr17:2345996 Blo01g00173 Blo-Chr1:2381496 1.31E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016218 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00230 Blo_Chr17 FPKM 0.348238 0.0 0.249857 0.324395 3.035221 2.192381 2.93939 5.693036 5.585578 6.114905