Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00232 ATGACCAGAAAGAAGGTGAAGCTTGCATTCATCCTTAATGATTCTGCAAGAAAAGCCACTTTCAAGAAGAGGAAGAAAGGTCTGATGAAGAAGGTGAGCGAGCTGAGCACTCTGTGTGGAATCGAAGCTTGTGCTGTGATTTTCAGTCCGTACGATTCTCATCCTGAGGTATGGCCGTCTGTCAATGGAGTCCAACGAGTGCTTGCCAGGTTCAGGAAAATGCCAGAAATAGAGCAAAGCAAGAAGATGATGAACCAGGAGAACTTCCTCAGGCAGAGGATAACGAAAGCTGACGAGCAGCTGAAGAAGCTGTTGAAGGAGAACAGAGAGAAGGAGATTACTCGGGTCATGTTCGACTGCCTAACTGGAAGATCTTTCCAAGGTCTAACAATGGTAGATTTGAGCGATCTAGGGTGGGTGGTCGACCGGCATTTGGACGACATTGCAAAGAGAGAGAAGTATCTGAACAACCCAGTGGCTCAAAATGAAAACCAGACCTTGGCTGCACCAACAGTGGCGGGCGAGGAAGAAATAGCGTATATAAATGGAGATCAAAGCTTTCAAACAATGGAACCAGCGCAGAGATCATCACACCCATGGTTTATTGAGATGGTGAATTCAACCCGAGATCATCATCAACATCATCAAATGATGGGGTTTGGAGTGGAGGACACGATTTTACCCTTTGGAGATAGAAACCATAGCTCTATCTGGTCTACTCCATTTTCACCATGA 735 45.85 MTRKKVKLAFILNDSARKATFKKRKKGLMKKVSELSTLCGIEACAVIFSPYDSHPEVWPSVNGVQRVLARFRKMPEIEQSKKMMNQENFLRQRITKADEQLKKLLKENREKEITRVMFDCLTGRSFQGLTMVDLSDLGWVVDRHLDDIAKREKYLNNPVAQNENQTLAAPTVAGEEEIAYINGDQSFQTMEPAQRSSHPWFIEMVNSTRDHHQHHQMMGFGVEDTILPFGDRNHSSIWSTPFSP 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2376899 2377715 - BLOR16053 Blo17g00232 72620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00232 244 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Blo17g00232 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 221 - -
Blo17g00232 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Blo17g00232 244 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Blo17g00232 244 Coils Coil 87 114 - -
Blo17g00232 244 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01250 Blo-Chr1:47469483 Blo17g00232 Blo-Chr17:2376899 6.73E-32 dispersed
Blo03g01549 Blo-Chr3:43144185 Blo17g00232 Blo-Chr17:2376899 4.59E-70 dispersed
Blo17g00232 Blo-Chr17:2376899 Blo11g00363 Blo-Chr11:3072309 1.76E-13 dispersed
Blo17g00232 Blo-Chr17:2376899 Blo17g00237 Blo-Chr17:2393355 5.85E-35 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13500 PF00319 SRF-TF 4.10E-19 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00232 - - cit:102608220 269.24