Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00232 ATGACCAGAAAGAAGGTGAAGCTTGCATTCATCCTTAATGATTCTGCAAGAAAAGCCACTTTCAAGAAGAGGAAGAAAGGTCTGATGAAGAAGGTGAGCGAGCTGAGCACTCTGTGTGGAATCGAAGCTTGTGCTGTGATTTTCAGTCCGTACGATTCTCATCCTGAGGTATGGCCGTCTGTCAATGGAGTCCAACGAGTGCTTGCCAGGTTCAGGAAAATGCCAGAAATAGAGCAAAGCAAGAAGATGATGAACCAGGAGAACTTCCTCAGGCAGAGGATAACGAAAGCTGACGAGCAGCTGAAGAAGCTGTTGAAGGAGAACAGAGAGAAGGAGATTACTCGGGTCATGTTCGACTGCCTAACTGGAAGATCTTTCCAAGGTCTAACAATGGTAGATTTGAGCGATCTAGGGTGGGTGGTCGACCGGCATTTGGACGACATTGCAAAGAGAGAGAAGTATCTGAACAACCCAGTGGCTCAAAATGAAAACCAGACCTTGGCTGCACCAACAGTGGCGGGCGAGGAAGAAATAGCGTATATAAATGGAGATCAAAGCTTTCAAACAATGGAACCAGCGCAGAGATCATCACACCCATGGTTTATTGAGATGGTGAATTCAACCCGAGATCATCATCAACATCATCAAATGATGGGGTTTGGAGTGGAGGACACGATTTTACCCTTTGGAGATAGAAACCATAGCTCTATCTGGTCTACTCCATTTTCACCATGA 735 45.85 MTRKKVKLAFILNDSARKATFKKRKKGLMKKVSELSTLCGIEACAVIFSPYDSHPEVWPSVNGVQRVLARFRKMPEIEQSKKMMNQENFLRQRITKADEQLKKLLKENREKEITRVMFDCLTGRSFQGLTMVDLSDLGWVVDRHLDDIAKREKYLNNPVAQNENQTLAAPTVAGEEEIAYINGDQSFQTMEPAQRSSHPWFIEMVNSTRDHHQHHQMMGFGVEDTILPFGDRNHSSIWSTPFSP 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2376899 2377715 - BLOR16053 Blo17g00232 72620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00232 244 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Blo17g00232 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 221 - -
Blo17g00232 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo17g00232 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Blo17g00232 244 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Blo17g00232 244 Coils Coil 87 114 - -
Blo17g00232 244 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00232 - - - cit:102608220 269.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01250 Blo-Chr1:47469483 Blo17g00232 Blo-Chr17:2376899 6.73E-32 dispersed
Blo03g01549 Blo-Chr3:43144185 Blo17g00232 Blo-Chr17:2376899 4.59E-70 dispersed
Blo17g00232 Blo-Chr17:2376899 Blo11g00363 Blo-Chr11:3072309 1.76E-13 dispersed
Blo17g00232 Blo-Chr17:2376899 Blo17g00237 Blo-Chr17:2393355 5.85E-35 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
Blo06g00910 . 1 349 Type I MADS-box Gene Family AT2G03060 50.8 2.2e-92 336.3
Blo04g01381 . 131 297 Type I MADS-box Gene Family AT5G60440 62.7 2.8e-50 196.1
Blo03g01549 . 1 171 Type I MADS-box Gene Family AT5G48670 60.8 1.8e-55 213.4
Blo17g00232 . 1 157 Type I MADS-box Gene Family AT5G48670 62.0 1.5e-49 193.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13500 PF00319 SRF-TF 4.10E-19 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00232 Blo_Chr17 FPKM 0.887562 0.0 1.337676 1.72704 1.244081 1.400506 1.785943 1.655699 1.593608 1.71514