Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00236 ATGCAACCAACACCTGCTGGTGGACGTAGTGGCAGTGGTGGTGTCGGCAGCGAGGGAGAACCGAGTCACGGGGTCGGACTCGCTCGATTTCGCTCGGCTCCGGCGACCTGGTTAGAGGCACTTCTGGACGAAGAAGAGGAAGACTTGTTGAAGCATAATCAGTGCTTTACCCAGCTTCTTTCCAACAACTTAGACATACCCAGTTCTCAAAAATCGGGTTCTTTCGGTTCATCGACCGTTCAGGATTTATTTCAGCTCGGTTCTTCGGATGGGTTTTTGAGGCAGAACAGTTCGCCGGCCAAATTCCTAGCCAACTGCGGAATTGGGTCGGATGGATTCATCCTCAATACCGGAATTTCAGCTTCCAACGGCTTCCAGCCGCCGAATATGGAAGCATCTCCGACGACGTCAAAAAGAGCTAGGGAAGCCAAAATCCGAAATATTCCTCCAAAATTTTCCGCCCAGGTGAAAGAGGAGGAAAATGGCGAGGTCCTTGGTGGGGTTTCAAGCTCTATCGACATGGAGATAGACAAGCTTTTGGAGGATTCAGTACCATGCCGAGTCCGTGCAAAGCGTGGCTGTGCTACGCACCCTCGCAGCATTGCAGAGAGGGTTCGAAGAACTCGCATTAGTGACAGGATAAGGAAGCTTCAGGAGTTGGTGCCTCATATGGACCGGCAAACAAACACTGCCGATATGCTAGAGGAGGCCGTAGAGTACGTCAAATTTCTTCAGAAGCAGATTCAGGTTCCCTTTCATTTCTCTGTTGTATTGTATCGTTCCTGCGTTGTTCTTGGATTGGTCAATTCTTCTTAA 816 50.0 MQPTPAGGRSGSGGVGSEGEPSHGVGLARFRSAPATWLEALLDEEEEDLLKHNQCFTQLLSNNLDIPSSQKSGSFGSSTVQDLFQLGSSDGFLRQNSSPAKFLANCGIGSDGFILNTGISASNGFQPPNMEASPTTSKRAREAKIRNIPPKFSAQVKEEENGEVLGGVSSSIDMEIDKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPHMDRQTNTADMLEEAVEYVKFLQKQIQVPFHFSVVLYRSCVVLGLVNSS 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2390044 2391948 + BLOR16057 Blo17g00236 72624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00236 271 CDD bHLH_AtbHLH_like 199 250 IPR045239 -
Blo17g00236 271 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 258 IPR036638 GO:0046983
Blo17g00236 271 MobiDBLite consensus disorder prediction 1 26 - -
Blo17g00236 271 SMART finulus 200 250 IPR011598 GO:0046983
Blo17g00236 271 PANTHER TRANSCRIPTION FACTOR BHLH80 22 254 - -
Blo17g00236 271 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Blo17g00236 271 Gene3D - 195 251 IPR036638 GO:0046983
Blo17g00236 271 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 254 - -
Blo17g00236 271 Pfam Helix-loop-helix DNA-binding domain 199 245 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00236 Blo-Chr17:2390044 Blo02g00441 Blo-Chr2:5971134 7.21E-29 dispersed
Blo17g00236 Blo-Chr17:2390044 Blo07g01262 Blo-Chr7:32821220 4.27E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13501 PF00010 HLH 2.60E-10 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00236 - - tcc:18593029 273.478