Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00250 ATGTTGGGAAGCTCCGACATGGTCTTCTCATCGTCGAAAACAATTCCCATGATTTCAGTTTTTCAAAAACGTTGTCGAACGTTGGCAATTGTTTTGGCTCCACTGTCTAGACTGAAATCTTACAACAATACTCCTCAGTCCCATGCCATCTTCTATTATTCTCAGGGAACCTCCAATGGAGGTAACCAGATACTCCTAAGGAGCAAGTTGAAGCATGGGAACCCATTGTCGATGCCGTTCATTGGAAAGGCAGTATCTTCTTTTGTCAGATTTGGCATTGTGGGAGGGTATCCAATTCAGCCAGGTGGACAAGCTCCAATCTCTTGCACAGACAAAGCGATACCCAACCAAAAACGTTCCAATGGGTTAGTTGTGGATGAGTTCACTCCTCCGAGACGGTTAAGAACTGAGGAAATCCCTCTTATTATAAATGATTTTAGACTGGCTGCGAGGAATGCTATCGAAGCTGGTTTTGATGGGGCTGAAATCCATGGCGCTTATGGCCACCTTAACGACCAGCTCATGCAAGATGAAGTGAACGATAGAACAGACCAATACAGTGGGTCCCTAGAGAATCGATGCTGA 585 45.13 MLGSSDMVFSSSKTIPMISVFQKRCRTLAIVLAPLSRLKSYNNTPQSHAIFYYSQGTSNGGNQILLRSKLKHGNPLSMPFIGKAVSSFVRFGIVGGYPIQPGGQAPISCTDKAIPNQKRSNGLVVDEFTPPRRLRTEEIPLIINDFRLAARNAIEAGFDGAEIHGAYGHLNDQLMQDEVNDRTDQYSGSLENRC 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2494375 2498144 + BLOR16071 Blo17g00250 72638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00250 194 Pfam NADH:flavin oxidoreductase / NADH oxidase family 126 194 IPR001155 GO:0010181|GO:0016491
Blo17g00250 194 PANTHER NADH OXIDOREDUCTASE-RELATED 28 62 IPR045247 GO:0010181|GO:0016491
Blo17g00250 194 PANTHER NADH OXIDOREDUCTASE-RELATED 89 194 IPR045247 GO:0010181|GO:0016491
Blo17g00250 194 SUPERFAMILY FMN-linked oxidoreductases 30 194 - -
Blo17g00250 194 Gene3D Aldolase class I 82 194 IPR013785 -
Blo17g00250 194 PANTHER 12-OXOPHYTODIENOATE REDUCTASE 11-RELATED 89 194 - -
Blo17g00250 194 PANTHER 12-OXOPHYTODIENOATE REDUCTASE 11-RELATED 28 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00250 K05894 OPR; 12-oxophytodienoic acid reductase [EC:1.3.1.42] - twl:119984086 188.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00250 Blo-Chr17:2494375 Blo18g00232 Blo-Chr18:2282195 5.09E-58 dispersed
Blo17g00249 Blo-Chr17:2482256 Blo17g00250 Blo-Chr17:2494375 5.61E-56 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1646 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00250 . . . . . . Bma02g00315 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0033890 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00250 Blo_Chr17 FPKM 14.717557 14.036263 14.35416 15.91657 13.456359 14.326264 15.744401 18.912828 20.612116 28.400961