Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00251 ATGATGAAAGCCGTATCAAACGAGATCGGAGCAGATAGAGTCGGAATAAGGCTGCCTCCTTTTGCGGATTACATTGGAACCATGCGAGAGCTTATCCAGAGGTACATCGAGTTCCCGGGATGCCAAGATCACCCAGACCAGGCACCTCAACGCCAAACTCTAAGTGATGCAACAGAGGAGATCAGTAAGCTGAAACAGGAGATTGATGCTCTACAGAAAGGTCTTCTTCCGTATAATTTTGGAGAAGGATCACCGGTGATGAGATTAGAGGAACTGCAAGTGCTAGAGAAGCAGCTTGAAATTTGGATCTGCCATATACGCTCTACAAAGAGCCCAAACCCATCTGGAAATATGATAAACAAGGATGTTGAGTCCTTAAGGGTGGAAGATTATGACAGTCCGTCATGTAAAAACAAGAATGACTTTGGTGAGGGCACAGCTTCAGGCCAAGATGGAGAAACAGTTGAAAATGGCGGAAGGAAGAGAGCAATGGTGCCTGCTTTATTCGTTTTTGGAGATTCTCTAATCGATAATGGAAACAACAACAATCTCCTTTCCTTCGCCAAAGCCAACTATTTCCCCTACGGTATTGATTTCAAATCCAATGGCCGTCACCCGACTGGGAGATTCTCTAATGGGTATACCATGGTTGATGAAATAGCTGAGCTTCTGGGGCTTCCATTGATTCCTCCAAACTCTGAAGCTTCTGGAAACCAAACACTTCAAGGAGTAAACTACGCCTCTGCGGCTGCTGGAATTCTGGATGCCACTGGCAGAAACTTTGTGGGTCGTATACCATTTAATCAGCAAATAAGCAACTTTGAGATGACAGTTGACTATATAGCGGATGATATTGGAGAAGACAATTCAGCAAAGATGACCGGAAAGTGCATATTCTTTGTCGGAATGGGCAGCAATGACTATCTAAACAACTTCCTCATGCCTAACTATCCGACGAGAAATCAATACAACCCTCAACAATTTGCCAATCTCTTGGTCCAAAACTACTCTCAGCAGCTCACTAAACTTTATAATCTCGGTGCTCGGAAGTTCGTCATCGCCGGAATCGGTCTAATGGGTTGCATTCCAAGCATTTTAGCTCGTAGCAGAAATGGAAGCTGCTCGGCAGAAGTAAACCAGCTTGTTCTTCGTTTCAATTCAAACGTCAAGGCCATGATTAACAATCTCAACAGCAGTCTTTCTGATGCAAGATTCACTTACATAGATGTCGCCCAAATGTTCCAAGACATCCTTGATAACTCAAAGGATTATGGATTTCGGGTCGTGAATCGCGGGTGCTGTGGGATTGGGAGGAATAGAGGGCAAATAACATGTCTGCCATTGGAAATACCATGTCCAAACAGAGAAGAATATGTGTTTTGGGATGCATTCCATCCAACAGAGGCAGTGCATATCCTCTTGGGGAAGACAGCTTTCAATGGCAGCTCAAGGTTTATATATCCCTTGAACATAGAACAGCTTGCCAATCTAAAAATTCAACCCAGCAACTAG 1512 44.11 MMKAVSNEIGADRVGIRLPPFADYIGTMRELIQRYIEFPGCQDHPDQAPQRQTLSDATEEISKLKQEIDALQKGLLPYNFGEGSPVMRLEELQVLEKQLEIWICHIRSTKSPNPSGNMINKDVESLRVEDYDSPSCKNKNDFGEGTASGQDGETVENGGRKRAMVPALFVFGDSLIDNGNNNNLLSFAKANYFPYGIDFKSNGRHPTGRFSNGYTMVDEIAELLGLPLIPPNSEASGNQTLQGVNYASAAAGILDATGRNFVGRIPFNQQISNFEMTVDYIADDIGEDNSAKMTGKCIFFVGMGSNDYLNNFLMPNYPTRNQYNPQQFANLLVQNYSQQLTKLYNLGARKFVIAGIGLMGCIPSILARSRNGSCSAEVNQLVLRFNSNVKAMINNLNSSLSDARFTYIDVAQMFQDILDNSKDYGFRVVNRGCCGIGRNRGQITCLPLEIPCPNREEYVFWDAFHPTEAVHILLGKTAFNGSSRFIYPLNIEQLANLKIQPSN 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2498157 2512935 + BLOR16072 Blo17g00251 72639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00251 503 Pfam GDSL-like Lipase/Acylhydrolase 168 476 IPR001087 GO:0016788
Blo17g00251 503 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 155 497 - -
Blo17g00251 503 MobiDBLite consensus disorder prediction 139 153 - -
Blo17g00251 503 Gene3D SGNH hydrolase 157 483 IPR036514 -
Blo17g00251 503 Pfam K-box region 56 127 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo17g00251 503 Coils Coil 54 74 - -
Blo17g00251 503 PANTHER OS05G0419800 PROTEIN 155 497 - -
Blo17g00251 503 MobiDBLite consensus disorder prediction 134 158 - -
Blo17g00251 503 SUPERFAMILY SGNH hydrolase 296 477 - -
Blo17g00251 503 CDD SGNH_plant_lipase_like 166 482 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00251 - - - vvi:100258563 528.094
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01668 Blo-Chr1:56428859 Blo17g00251 Blo-Chr17:2498157 0 dispersed
Blo10g00840 Blo-Chr10:26745384 Blo17g00251 Blo-Chr17:2498157 2.34E-75 dispersed
Blo12g00832 Blo-Chr12:26632195 Blo17g00251 Blo-Chr17:2498157 0 dispersed
Blo14g00314 Blo-Chr14:3215270 Blo17g00251 Blo-Chr17:2498157 9.39E-51 dispersed
Blo17g00251 Blo-Chr17:2498157 Blo16g00424 Blo-Chr16:16562720 2.21E-78 dispersed
Blo18g00530 Blo-Chr18:7118438 Blo17g00251 Blo-Chr17:2498157 2.47E-74 dispersed
Blo02g01157 Blo-Chr2:43191993 Blo17g00251 Blo-Chr17:2498157 1.95E-74 transposed
Blo17g00251 Blo-Chr17:2498157 Blo18g00235 Blo-Chr18:2298106 2.29E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1600 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00251 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00251 Blo_Chr17 FPKM 31.25926 35.843487 33.918453 33.279701 33.938564 34.926525 37.973305 25.70999 23.774212 23.429338