Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00260 ATGAAAGAAGGGGGAGAAGATTTATTTGGTTGTTTGCTGGATGAGAAACCCGAAGCGAGAGAGAGGGAGAAATCGGGACCGAGAGGGGAGTCGAGCGATCGGCGCGAAGAGGAGGAATCGGACGGCGACGGCGACGACGGGTCGGGCATGCGACTCCGTCCCGATTGTGGCTACTGGTCGTCGGCGCGGCATCCGTGCGCGACGAACCATGGACGGGCTGTGTCGGCAGAGCAATCGGGCGTGCTTTCCGGCGACGATTTGAGTGACGATTCACGGTTGGCAGTGTGTGACGGCCGGGGAGCTTGGTTGAATGGGCAGGGGATTTCGGATGAAAACAACAGGGGCTTGGCAACGCGGGTCCAGCCCTGTGTGAATTCAAGGGAAAAGGACGCGGGTCCTTTTGGTGAGAGCTGGGAATTTAACTCCTTGTCTTCGGCTATGATGATTAAAAGGAAGCAAACTCTTCTGTGTAAGTTTAACCGAGAAGAAGTGAGAGGAAATGATGGCCAGGGAACTCTCTGGAAAATTATGAAGGAGGTGCAGGATCTTCTCGGCTTTAGAACCGATTTACTCGGTCTGGTTCTTGGTTCCCGGTACCGCAGAACCGTCTCGGTCACTCCTCTCACTCTCAGCCGACAACCAGTCTCCTCCGATCTTCCAGAGTTCCCGAGTCCCGACTCCCCGACCCTGTGGCGTCCCGAGCAAAGCTCCCGTCCTGGTCCCAGCGTAGCCTCCACCCGAGCTCCTGTAGTCCTTTTCAAATCTCCCCTCCTGCGTCGGCATCCCAAGTCTCGAGCTCTAGTTCGAGACTTCGTGTTTAGAAATCTCAAGTCTCCAGTCCTGATTGTGTATCGCCTGCTGCTGGCCGATGTAGCCTCCAATCCCAACCTCCATCCATTTCGAGTTCGGCAGTCTCAAGTCTTCCGATCCGGCTCTGTCTCTCTTTCTTCTGCTGCTGGTCGCTGCTCTCAAGTGTTGAAGAACGGGAATCATAAGGGGACGCCGGTGGACTACCTGATTGACAGAATTGTTGTCGTCGTCGCCAACGAAGCATCTCCGTTGGGTGGAGTTGACAATGAGGTAGAGGATGTGAAGCGGGAGCTTCAAAGCATGAGATCTTTTCTCATCGATGCAAAAGCAAAGCGATGGTCCACAAAAGGAGAAAAATCTTGGATTGCTGAAGACTTGATATTTAACTGTGGAGGCTTGTCAGTGGCCTTTGTTTTCGTGACTTCTTGGGATAGTGTCAATGCTTCGTCAATCTATAACAGAGTTCAGAAGTTGAAGAAACAGTTTGCCAAATTCTACGTTGTTGTTATCCTTTCAACCAGGGAACAAAATGATTCTTTTGTTCGCTCATACTTCAAATACAGTATGGAGCTTGGTAGACCAACATTTGTGCCAGTTCATGATTTTGAGATGGGTTTTGAAAAGATTGTGAAGATAGCTCATTCTCGTGGGGCGAGCAAGCAGCAAGATGCCATATCAAAACTGAAAGCTGAGAGGAAGAGATCAGTGGAAGTAATTGAAAATTTCCGGACTGTGGTAACCTCCATACCAGGCATTGATGATCATGATGCAAACTCGCTAGTTCAAGCCATTGGTTCGATCAAAGCAAATGCCAAAGCATCAAAGGAAGACATTATGGAGAACACGGACCTTCCGGCTGCCAAGGCAGACACAATTAAAAGTTTCTATGTCTATGTCGTCACCCTCGTTTTGTATTTCTTTCGAGGCCTGAAAATAGCCATTAACATGGCCTCGATTCTTGTTTCTTCTTCATCTTCTGCTTTCAACACTCCTTTCTCGTATGTTCGCCAGCTTTTCGAAGGACTGGCTTCCGATCGTCCGGAAGACGATGGTACAAAGATGGTTGATGATTGTCGGGGTTTGAAGGGTGAAGAACCAATTTCTGTGGAGAAGGGTTTGAGTTCGCATGTTAAGTTGAAGAGGAGACCGGCAAACCTTGTGGTCCCTGAATATTGTCCGGATTTGTTCAGCGGTCAAATGAAAAAGAAGATGGATGGGAGGGAGTTGATCGAGGTCCGAGGAAGAGATTTTCGTTTGGCTAGCAAGAGGGGAAGGAGGGAGGCAATGGAAGATAGCTATGCAGCCATGGCTGACGTTTTAGGCGATCAAAAACAGGCATTTTTCGCCGTGATAGACGGGCATGGAGGGCGCAGTGCAGCTGACTTCGTTGCAGAAAATCTGGGGAAAAACATAGTGAAGGAGCTTGAGATGGTTAATGGAGACGATGAACTGGCAATTCGCAGAGGATATGAAGTTACAGACAATGAGTTTCTTCGTCAGGGCGTGAGCAGTGGAGCCTGTGCAGCAAGTGTGCTAGTGAGAGGGGGAGAATTGCACGTAGCAAATGTAGGCGATTGTAGAGTAGTGTTGAGTAGGAAAGGAGAGGCTCATCCTCTCACCAACGAGCACCGGCTATGCCAGGAGGACGAGCGGGTTCGGGTCGAAAACTTGGGCGGTTTTGTGGATTGCCGAAACGGAGTTTGGAGAGTCCAAGGCTGTCTAGCAGTGTCGAGAGCCATTGGAGACCTTCACATGAAAGAGTTGATCATTTCAAAGCCTGATATCATCAAGCTTCCTTTGACTCCAGATTGTCAATTCTTAATCATGGCTTCTGATGGATTATGGGACAAGGTAAACGAAGAAGAAGCTGTAGGTCTAGTTTCGAAAAACTACAACAACGGGGAAGATGGAATGAAGTGTTGTAAAGAACTAATCGAGATGTCGTGCAGGAGAGGGAATTTCGACGACATAACTGTTATGATCTTACGATATATCAAAGGCTCCCCTAGTCTTGGTTTATTCTATCCTGCTACTTCCTCTATTCAGTTGAAAGTTTTTACTGATTCAGATTGGGGTACATGTCCTGATTCTCGCCGTTCAATTACGGGTTTTTGTGTTTTTCTTGGTAATTCCTTAATCTCTTGGAAGTCCAAGATGTTGAGTTATGGAAAACAACACACAGTTTCTAAATCTTCTGCTGAGGCCGAATATAGGGCTATGGCTCATGCTACGTGTGAAGTTATTTGGCTAAAGGCTCTACTTGCTGACTTTCGGGTTTCATCTCCTTTTCCTTCGCTTTTGTTCTGTGACAGCCAATCTGCTTTACATATTGCAGCTAACCCTGTCTTTCATGAAAGAACCAAACACATCGAGATTGACTGTCATTTGGTTTGTCAGCAAATTCAACAACATCTCATAAAGACACTGCATGTTTCGTCTCGTCATCAGCTTGCTGACATTCTCACCAAGCCTCTTCCTCCTGGTCTCTTCCGTGAACTTCTTTGCAAGATGGAAATGCTTGATTTGCATTGTCCATCTTGA 3351 47.81 MKEGGEDLFGCLLDEKPEAREREKSGPRGESSDRREEEESDGDGDDGSGMRLRPDCGYWSSARHPCATNHGRAVSAEQSGVLSGDDLSDDSRLAVCDGRGAWLNGQGISDENNRGLATRVQPCVNSREKDAGPFGESWEFNSLSSAMMIKRKQTLLCKFNREEVRGNDGQGTLWKIMKEVQDLLGFRTDLLGLVLGSRYRRTVSVTPLTLSRQPVSSDLPEFPSPDSPTLWRPEQSSRPGPSVASTRAPVVLFKSPLLRRHPKSRALVRDFVFRNLKSPVLIVYRLLLADVASNPNLHPFRVRQSQVFRSGSVSLSSAAGRCSQVLKNGNHKGTPVDYLIDRIVVVVANEASPLGGVDNEVEDVKRELQSMRSFLIDAKAKRWSTKGEKSWIAEDLIFNCGGLSVAFVFVTSWDSVNASSIYNRVQKLKKQFAKFYVVVILSTREQNDSFVRSYFKYSMELGRPTFVPVHDFEMGFEKIVKIAHSRGASKQQDAISKLKAERKRSVEVIENFRTVVTSIPGIDDHDANSLVQAIGSIKANAKASKEDIMENTDLPAAKADTIKSFYVYVVTLVLYFFRGLKIAINMASILVSSSSSAFNTPFSYVRQLFEGLASDRPEDDGTKMVDDCRGLKGEEPISVEKGLSSHVKLKRRPANLVVPEYCPDLFSGQMKKKMDGRELIEVRGRDFRLASKRGRREAMEDSYAAMADVLGDQKQAFFAVIDGHGGRSAADFVAENLGKNIVKELEMVNGDDELAIRRGYEVTDNEFLRQGVSSGACAASVLVRGGELHVANVGDCRVVLSRKGEAHPLTNEHRLCQEDERVRVENLGGFVDCRNGVWRVQGCLAVSRAIGDLHMKELIISKPDIIKLPLTPDCQFLIMASDGLWDKVNEEEAVGLVSKNYNNGEDGMKCCKELIEMSCRRGNFDDITVMILRYIKGSPSLGLFYPATSSIQLKVFTDSDWGTCPDSRRSITGFCVFLGNSLISWKSKMLSYGKQHTVSKSSAEAEYRAMAHATCEVIWLKALLADFRVSSPFPSLLFCDSQSALHIAANPVFHERTKHIEIDCHLVCQQIQQHLIKTLHVSSRHQLADILTKPLPPGLFRELLCKMEMLDLHCPS 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2646590 2674887 + BLOR16081 Blo17g00260 72648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00260 1116 SUPERFAMILY RuvA domain 2-like 503 565 IPR010994 -
Blo17g00260 1116 MobiDBLite consensus disorder prediction 1 35 - -
Blo17g00260 1116 MobiDBLite consensus disorder prediction 213 244 - -
Blo17g00260 1116 PANTHER PROTEIN PHOSPHATASE 2C 569 932 IPR015655 GO:0004722|GO:0006470
Blo17g00260 1116 SMART PP2C_SIG_2 682 934 IPR001932 -
Blo17g00260 1116 Pfam Rx N-terminal domain 337 393 IPR041118 -
Blo17g00260 1116 Gene3D - 486 568 - -
Blo17g00260 1116 PANTHER PROTEIN PHOSPHATASE 2C 2-RELATED 569 932 - -
Blo17g00260 1116 MobiDBLite consensus disorder prediction 213 243 - -
Blo17g00260 1116 Gene3D - 680 940 IPR036457 -
Blo17g00260 1116 SMART PP2C_4 672 932 IPR001932 -
Blo17g00260 1116 CDD PP2Cc 689 933 IPR001932 -
Blo17g00260 1116 CDD RX-CC_like 336 397 IPR038005 -
Blo17g00260 1116 Pfam Protein phosphatase 2C 687 926 IPR001932 -
Blo17g00260 1116 MobiDBLite consensus disorder prediction 1 54 - -
Blo17g00260 1116 Gene3D - 336 395 - -
Blo17g00260 1116 SUPERFAMILY PP2C-like 687 933 IPR036457 -
Blo17g00260 1116 CDD RNase_HI_RT_Ty1 954 1097 - -
Blo17g00260 1116 ProSiteProfiles PPM-type phosphatase domain profile. 686 934 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g01176 Blo-Chr3:38069176 Blo17g00260 Blo-Chr17:2646590 1.93E-71 dispersed
Blo04g00226 Blo-Chr4:1763274 Blo17g00260 Blo-Chr17:2646590 9.50E-78 dispersed
Blo13g00800 Blo-Chr13:30736880 Blo17g00260 Blo-Chr17:2646590 1.44E-79 dispersed
Blo17g00260 Blo-Chr17:2646590 Blo09g00036 Blo-Chr9:503286 6.22E-40 dispersed
Blo17g00461 Blo-Chr17:6150826 Blo17g00260 Blo-Chr17:2646590 9.83E-09 dispersed
Blo01g01427 Blo-Chr1:53080047 Blo17g00260 Blo-Chr17:2646590 2.70E-46 wgd
Blo12g01039 Blo-Chr12:28238832 Blo17g00260 Blo-Chr17:2646590 1.28E-49 wgd
Blo17g00260 Blo-Chr17:2646590 Blo18g00241 Blo-Chr18:2371305 4.43E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00260 K17506 - rcu:8277160 394.045