Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00263 ATGGCTGTTCTGGAAGAATTGCCATACGCCGTAGTTCCGGAATTCATTCCTTTCGCAAAACCCACTCACGAAATGGCAGGAACTTATAATGATTTAACCTTCGATGCTGTTGTTGGAGACACGACAATCGTGGCAAACAGATCCTTGTATGTAGACTTCACATTGCCATTTACAGAGTCTGGTGTATCAATGGTGGTTCCAATTGAAAACAACTCCAAAAGAAACGCCTGGGCTTTCTTAAAGCCTTTAACTTGGGATCTTTGGCTAACAAGCGGCTGTTTCTTTGTTTTTATTGGTTTTATCGTTTGGATTCTCGAACACAGAATAAATGAGGATTTCAGAGGACCTCCAATTCGTCAGATCGGAACAAGCCTCTGGTTCTCCTTCTCCACCATGGTATTTGCACCAAAGGAGATGGTGTATAGTAATTTGGCAAGGCTAGTGGTGGTTATATGGTTCTTCGTCGTTCTCATTCTTACTCAGAGTTACACTGCCAGTTTGACTTCGCTTTTGACAGTTCAACAGCTACAACCGACCATTACTGATTTCTATCAGCTTTTGAAGAGCGGAGACCGTGTTGGGTATCAAGTCGGTTCTTTTGTTTATGGATTCTTGAAATCAATGAAGCTAGACGAGTCTAGGCTTGTTACCTATCGTTCTCCAGAAGAATTAAATGACCTCTTCATCAAAGGTAGCGGAAATGGCGGAATCTCTGCAGCGTTCGACGAAATTCCGTACACGAAGGTTTTCCTCTCCAAGTACTGCTCCAAATACACCACGGAAGAACCTTCCTATAAAATTGATGGATTTGGATTCGTGTTTCCAAAAGGATCTCCCATGGTCGCTGATATTTCAAGGGCGATCTTGAACGTGACAGAAGGAGAACAGATGAACAAAATAAACAACAAATGGTTTGGTAAATTAACGAGTTGTCCAAGTACCAGTTCCGAGATTACTTCCACCAGTCTCAGCCTCGGCAGCTTTTGGGGCTTATTTCTGATAGCAGGCGCCGCTTCAATTCTGGCTCTGATCATATTCTTCATCAGATTTTCCCTTAAGGAGAAGCAGAAGCTCCAACAAATCCAATCAACGGACTCTGTTTGGAAAAATATTCGCGACGTCCTCAAAATCTTCGATCAAGAAGACACAACTTTTCCGAGAAAAAGACATTTTCCGACGGAAGTGATCTTCCTAGCAATGATGGCGCGACTATGGCAGCTAACGACTCCCAACCTGCAAACCCTAAATCCCCCCCACACGCCATTTTCGTTGGACTCTTCCCAACAGACGCCAGTACATGTAGGGGAAGCGACGACTCCTCTTTCCGGTCCAGCAGAACCGAGCGAAATCCGTGTTGCATCCCCTGATCGGCGAGGAACAGACTGA 1386 44.52 MAVLEELPYAVVPEFIPFAKPTHEMAGTYNDLTFDAVVGDTTIVANRSLYVDFTLPFTESGVSMVVPIENNSKRNAWAFLKPLTWDLWLTSGCFFVFIGFIVWILEHRINEDFRGPPIRQIGTSLWFSFSTMVFAPKEMVYSNLARLVVVIWFFVVLILTQSYTASLTSLLTVQQLQPTITDFYQLLKSGDRVGYQVGSFVYGFLKSMKLDESRLVTYRSPEELNDLFIKGSGNGGISAAFDEIPYTKVFLSKYCSKYTTEEPSYKIDGFGFVFPKGSPMVADISRAILNVTEGEQMNKINNKWFGKLTSCPSTSSEITSTSLSLGSFWGLFLIAGAASILALIIFFIRFSLKEKQKLQQIQSTDSVWKNIRDVLKIFDQEDTTFPRKRHFPTEVIFLAMMARLWQLTTPNLQTLNPPHTPFSLDSSQQTPVHVGEATTPLSGPAEPSEIRVASPDRRGTD 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2708962 2710629 + BLOR16084 Blo17g00263 72651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00263 461 CDD GluR_Plant 2 305 - -
Blo17g00263 461 Gene3D - 1 74 - -
Blo17g00263 461 Gene3D - 247 313 - -
Blo17g00263 461 SMART GluR_14 1 307 IPR001320 GO:0015276|GO:0016020
Blo17g00263 461 Pfam Bacterial extracellular solute-binding proteins, family 3 30 307 IPR001638 -
Blo17g00263 461 PANTHER GLUTAMATE RECEPTOR 2.9 2 381 - -
Blo17g00263 461 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 381 - -
Blo17g00263 461 MobiDBLite consensus disorder prediction 416 461 - -
Blo17g00263 461 Pfam Ligand-gated ion channel 308 338 IPR001320 GO:0015276|GO:0016020
Blo17g00263 461 Gene3D - 75 213 - -
Blo17g00263 461 MobiDBLite consensus disorder prediction 416 436 - -
Blo17g00263 461 SUPERFAMILY Periplasmic binding protein-like II 3 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00263 Blo-Chr17:2708962 Blo18g00248 Blo-Chr18:2559804 6.51E-170 dispersed
Blo17g00263 Blo-Chr17:2708962 Blo17g00264 Blo-Chr17:2724289 8.45E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00263 K05387 - qsu:112000819 478.404