Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00268 ATGGGAGAGGTACAGAAATGGTGCGTGGTGACGGGAGGGCGGGGCTTCGCGGCACGGCATTTGGTGGAAATGCTCATCAAGTACGATATGTTCGCCGTTCGTGTTGCTGATTTAGGCCCCGCCATTGAACTAGATACCAGCGAGGAGCATGGAGTCCTTGGGGAAGCTTTTAGCTCAGGTCGGGCTGAATACGTCTCCACCGATCTCCGAAACAAAGCTCAAGTGTTAAAAGGCAATTTAACATTGGTTTTGAATTCTGCAGCTTTTGAAGGAGCCGAGGTTGTATTCCACATGGCTGCTCCGAATTCATCCATTAACAATTACAAGCTCCATTACTCTGTCAATGTCGAAGGAACGAAGAATGTAATTGAATCTTGCATTGAGAAAAACGTCAAGAGACTAATCTATACGAGTTCACCCAGTGTCGTGTTTGATGGCATACATGGAATTATCAATGGGGATGAGTCGCTGCCCTATCCAGAGAAGCACATTGATTCCTATTCTGCTACCAAAGCTGAGGGAGAGACGTTAATCATCAAGGCAAATGGTGCTAATGGGCTTCTAACTTGCAGCATAAGGCCTAGCAGCATTTTTGGTCCTGGTGATAGATTGCTGGTTCCAACTTTAGTTGCAACTGCCAGGGCAGGAAAGTCCAAGTTTATTATTGGTGATGGCAATAACATTTACGACTTCACTTACGTTGAAAATGTGGCACATGCCCATGTTTGTGCTGAACGGGCCCTGGCATCAGAAGGAAGTGTTGCAGAAAAAGCATCTGGACAGGCATATTTTATAACTAACATGGATCCTATCAAGTTTTGGGAGTTTATGTCTCTTATTCTAGAGGGTCTTGGTTATCCAAGGCCTTATATTAAGATCCCTGCGTTTGTTATGATGCCGATTGGTTGTATCGTGGAGTGGATATTTAAGTTATTAGGCCCTTATGGAATGGCTGTTCCACAGTTGATACCTTCTAGAGTTAGACTTCTTTCTTGTAGCAGATCTTTTAATTGCTCAAAGGCGAAAGATCGACTTGGTTACTCACCAATAATATCACTTCAGGAAGGTCTGAACAAAACCATTGAATCATTCTCAAACTTGAGAGCTGAACATCATCCTAGAAAAACAAGGCCATCAAAAGCTTCCTTATACCTCGGCAGAGGAAGAGTTGCAGACACTTTACTCTGGAAGAATAAAAAACAGACGCTGACAGTGTTGTTAGCTTTGGTGGCAATTTACTACAACATCATTCTGCCTGGAGTTACCCTTATTACTGCGCTTTCAAAGATTCTCTTGGTGGTTCTTTTATTCTTATTCATTCATGGGAATTTGCCAGATAAAATATTTGGATATAGGATTGAGAAAATCCCCATTTCACATTTCCACTTATCGGAAGAGATGTCCCGAAAGGTTGCAGCATCAACGGCCTCTTCATGGAACAATGCAGTTAATATTTTTCAGTCTCTTTGCATGGGAAATGACTCCATCCTCTTTGTCAAGGTTATCATCTTCCTGTTGGTAGTAAGCTTTACTCCAGCCGTTTCACTTCAGAGTTTATTTCTTATTGTACTTCTAATTGCCTTCGGAGCTTTCTTTGTATACGAAAAAAAGGAGAAAGAAATTGATGCTTTCTTCCTTGAAATTCTCTCTTTTGGATGCAAAGTGAAGTCAGATGCTGGCCGAAAGTTATATCTGAAGGTTGATGCTGCACACACAATCAAGCATTCTCTGGTAGCTCTCATGGGTGGGCGTGAAGTTGAGGTGACAAACAACAAAGGGTGTTCTAGAATTTTTGATGGGTTTTCATCTCCATTGTGTTCCTTCAGAGGTACTCAACTATTAGAACCAATGTCTCCTGCTTCATCCTCTCTGGTGTCTGAACCGGAGAAACCTCTATCAAACGGTCCTTTCACCGGACTCATTATCTGCGTTACCGGTTTGTCCAAAGAAGCACGAAAACAAGTGATGGAAGCAACTGAGAGATTAGGCGGTCGGTACAGCCCCAACTTGCATCCTCAATGTACTCACTTGGTGTATTACAGCTCGTGTGGACGCAAGTTTGATCATGCTTTGAAGCATGGATCGAGAAATGGACTCTTTGTTGTTAGAATCGGGTGGTTTGTTGATAGTGTTAAGAGAAATGTGAAGATGAGCGAATCTCGGTATAGTGTCAAGGGTGTGGAAGAAAATGGTTTATTGCACTTATATGGATCGAATAAACCTATTTTCGGATCAGAAAATTCTTGTCTTCCTGTTGGAGCCAACGAAAAGAATCATTTTGACACGATTCGAGAACAGCGTCCACCAAATCTTTCTGGTCAATCCTTGTTCATTGATAAAAACATTTCGCTTGAGCTTCGAAATAAGGTTGCTGAAACTGCTGCTAGAGAAGGTGCATCATTGGTAGACCACTGGTTTGTTGGTTGTACCACCAGTCTTGTGGTTTGCGAAGGGACTTCGATGCAGAAATATCTTGGTCATTCGAGCAGCCTAGTTACGCCAATGTGGGTCCTGAAAACAGCCAAGGAGAAACGGGTGCAAAAGTTAGTCCATATGTCTGCTGACTTGGCTAGGCAGGTCGGGATGACACTTGAAGATTTGCAAAATGACATCGCCGAAGAGGTGATAAATAAGGAATATGGTGCTGAAAATGAAAAACGTTTTAACGGTAAAACAAGTCAAGCAGAGCGGGAACGGCTGGTCAACTCGGCTAAAATTGGAGTCAGAAACCGTCGAACTCACCGGATGCAGACTTGTCAAATCCCAATACGTCCATTGACCCCTAGTAGCCTTCTGGGTTCTGTCTGCTGGTCGATATCTGAGCCGACTTCATCCGCTTCTGTTTACACGGATTCCTTCAGTGGTGAAGATGTTAGCGAGCATCGTTCAAACTTTTTCGACGCAAAAGCCTATGGAAAAGACTCGGAAGCGTCGTTTGCAAATTTAACCCGGATGCTAACTGAAAGTGAGAAATCTGAACTTATATTGAAAACCCATTTCCTTACAATCCTGTTTCCGGTGGATCGATTTACCGAGATGGGACCGTCTTCGAGAACATTTTTTAGCAAGAACGGCTTTACATGTCTGCAAGTTTTGGATTATATTTATGCTTTCTATCAGGAGAAGATGTCGATTCATGAAGTAGAAGCTGCAATTCACACCGATTCAAAGCATGCCGACCGGCTCCGAGCAGCGTACTCGAGCAGAGCAACTGCAGAACAAGGATACGTTAGTTTCAAACGGATCGATTTCTTAGGCAGTCGTACAAGTTTTGAAATGTTGAAGCGGGTTTCAGGCGAAAACAACAGTAATGTGTATGAGCTGATAATCAGAGCATGA 3339 43.07 MGEVQKWCVVTGGRGFAARHLVEMLIKYDMFAVRVADLGPAIELDTSEEHGVLGEAFSSGRAEYVSTDLRNKAQVLKGNLTLVLNSAAFEGAEVVFHMAAPNSSINNYKLHYSVNVEGTKNVIESCIEKNVKRLIYTSSPSVVFDGIHGIINGDESLPYPEKHIDSYSATKAEGETLIIKANGANGLLTCSIRPSSIFGPGDRLLVPTLVATARAGKSKFIIGDGNNIYDFTYVENVAHAHVCAERALASEGSVAEKASGQAYFITNMDPIKFWEFMSLILEGLGYPRPYIKIPAFVMMPIGCIVEWIFKLLGPYGMAVPQLIPSRVRLLSCSRSFNCSKAKDRLGYSPIISLQEGLNKTIESFSNLRAEHHPRKTRPSKASLYLGRGRVADTLLWKNKKQTLTVLLALVAIYYNIILPGVTLITALSKILLVVLLFLFIHGNLPDKIFGYRIEKIPISHFHLSEEMSRKVAASTASSWNNAVNIFQSLCMGNDSILFVKVIIFLLVVSFTPAVSLQSLFLIVLLIAFGAFFVYEKKEKEIDAFFLEILSFGCKVKSDAGRKLYLKVDAAHTIKHSLVALMGGREVEVTNNKGCSRIFDGFSSPLCSFRGTQLLEPMSPASSSLVSEPEKPLSNGPFTGLIICVTGLSKEARKQVMEATERLGGRYSPNLHPQCTHLVYYSSCGRKFDHALKHGSRNGLFVVRIGWFVDSVKRNVKMSESRYSVKGVEENGLLHLYGSNKPIFGSENSCLPVGANEKNHFDTIREQRPPNLSGQSLFIDKNISLELRNKVAETAAREGASLVDHWFVGCTTSLVVCEGTSMQKYLGHSSSLVTPMWVLKTAKEKRVQKLVHMSADLARQVGMTLEDLQNDIAEEVINKEYGAENEKRFNGKTSQAERERLVNSAKIGVRNRRTHRMQTCQIPIRPLTPSSLLGSVCWSISEPTSSASVYTDSFSGEDVSEHRSNFFDAKAYGKDSEASFANLTRMLTESEKSELILKTHFLTILFPVDRFTEMGPSSRTFFSKNGFTCLQVLDYIYAFYQEKMSIHEVEAAIHTDSKHADRLRAAYSSRATAEQGYVSFKRIDFLGSRTSFEMLKRVSGENNSNVYELIIRA 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2784348 2796617 + BLOR16089 Blo17g00268 72656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00268 1112 ProSiteProfiles Reticulon domain profile. 390 550 IPR003388 -
Blo17g00268 1112 Gene3D BRCT domain 635 726 IPR036420 -
Blo17g00268 1112 Gene3D - 2 368 - -
Blo17g00268 1112 Pfam twin BRCT domain 640 694 IPR001357 -
Blo17g00268 1112 SUPERFAMILY BRCT domain 636 725 IPR036420 -
Blo17g00268 1112 Pfam Family of unknown function (DUF6699) 1021 1096 IPR046522 -
Blo17g00268 1112 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 366 IPR036291 -
Blo17g00268 1112 ProSiteProfiles BRCT domain profile. 632 724 IPR001357 -
Blo17g00268 1112 CDD BRCT_TopBP1_rpt2_like 635 714 - -
Blo17g00268 1112 SMART BRCT_7 634 714 IPR001357 -
Blo17g00268 1112 SMART BRCT_7 768 844 IPR001357 -
Blo17g00268 1112 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 582 1112 - -
Blo17g00268 1112 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 292 IPR002225 GO:0003854|GO:0006694|GO:0016616
Blo17g00268 1112 Pfam Reticulon 390 545 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00268 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - mnt:21401592 815.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00837 Blo-Chr6:31605786 Blo17g00268 Blo-Chr17:2784348 1.34E-07 dispersed
Blo17g00268 Blo-Chr17:2784348 Blo10g00719 Blo-Chr10:22788782 1.76E-13 dispersed
Blo07g00114 Blo-Chr7:1577956 Blo17g00268 Blo-Chr17:2784348 1.50E-124 transposed
Blo19g00278 Blo-Chr19:16628528 Blo17g00268 Blo-Chr17:2784348 0 transposed
Blo17g00268 Blo-Chr17:2784348 Blo18g00254 Blo-Chr18:2686637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00268 Blo_Chr17 FPKM 18.849514 20.893627 25.21772 23.426077 19.208759 12.914825 17.283113 7.471609 7.237199 7.545794