Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00273 ATGAGGATTTGGTGTTGCTTATGCTTTACTGCAGGAGAAGACGAAGCGGAAGAGGGAGATAGAGAGATTACCATGAGGAAGAAGGGGGTCGAAAATAAGGGAGATCCCGAGGCTTTTCTTGAAAATGACGATGAATATGGATTAGGACTTGTTGTTGATAGGCCTGCGCGTGATGAAAGAAGCATGTTTAGGGTGTTTGAGGAGATGCGTAGAGCAATGCGAGGTGATGCCAATGGTCATTGTGAGGCGGGTTTAACTTTTCCCGCACTTAACCCTTGGGAGTTTCACTACCGGGTTTCAAGCCGGCCCGACTGCGTGAGCAGTAGTAGTTCAGCTCCAGGTTCAGCGACTCGGGTTGGGGAAAATGGTATTGAGGAGTCTGATCGTGATCCTCACCACAAGCGAGCCAAAGTTCACACTGATTCTTGCTGTGGGAAAGATGAATTTGAGAGAAAGGACTCTAAAACAGAGGATTTAGAAATTCGGATGGATCTTACAGATGACTTGCTGCACATGGTTTTCTCTTTCTTGGACCACATAAATCTTTGTCGAGCTGCTATTGTCTGTAGGCAATGGCGAGCAGCTAGTGCTCATGAAGATTTTTGGAGGTGTTTGAATTTTGGGGATAGAAACATTTCAGTTCACCAATTTGGGGACATGTGTCGGCGATATCCTAACGCCACAGAGGTTAATATATCCGGCGCTTCTGCTGTTCACTTGCTTGTTATGAAGGCAGTTGCTTCATTAAGAAATCTTGAAGTCTTAACTTTGGGGAAAGGTATTCTGGGGGACACATTCTTCCATGCCTTAGCAGATTGCCTGACATTGAAGAGGTTGAATGTTAATGAGTCTACACTTGGTAATGGTATTCAAGAGATTCTGATAAACCATGATCAACTGCGTCATCTTTATCTGACAAAATGTCGAGTCATATGCATATCTGTCAGGTGCCCACAACTTGAGACATTGTCTTTGAAGCGCAGCAATATGGCACAAGCTATACTCAATTGTCCTCTTTTGCGTGATCTAGATATAGGCTTTTGCTACAAGCTTTCGGATGCTGCAATTCGTTCGGCAGCTACGTCATGTCCGCAATTAGAATCTTTAGATGTGTCATTTTGTTCATGTATTAGTGACGAAACAATACGTGAAATATCCCGCCCTTGTCCAAATCTCCATATTTTGAACGCGTCATACTGCCCTAATATATCTCTGGAGTCTGTTGAGCTGCCAATGTTGACAGTTCTTAAGCTTCACCACTGCGAGGGTATTACTTCGGCATCAATGACTGCAATATCCCAATTTTATATGCTTGAGGTATTGGAGCTTCATGATTGTGGCTTTCTAACTTCTGTGTCCTTGGACCTTCCACATTTGCAGAGTATTCGCCTCGTTCTTTGTCGCAAATTTGCTGATCTGAATTTACGGAGTGTCATGCTATCATCCATTACGGTGTCTAATTGTTCGGCCCTCCACCGTGTCAACATCACATCAAATGCACTTCAAAAATTAGCATTGCAGAACCTAGAAGGCTTAATTACCTTGGCTTTGCAATGCCAAAGTTTGCAGGAAGTGGACCTCACTGATTGTGAATCTCTCTGGAATTCTATCTGTGAGGTTTTTGGTGATGGTGGTGGGTGCCCTATGCTGAAGTCATTAGTTCTCGATAATTGTGTGAGTTTGACAGCAGTCCGATTTTGCAGCACCTCCTTAGTTAGTCTTTCTCTTGTTGGTTGTCGGGCCATCACAACACTCCAGCTTAAGTGCCCCTTCCTCGAGAGAGTGTGTTTAGATGGATGTGATCATCTTGAAATGGCATCATTTTGTCCTGTTGGTCTAAGATCACTTAATCTGGGTATATGTCCCAAATTGAATGAACTTAGAATTAAAGCCCCTCATATGGCTATACTGGAGCTTAAAGGCTGTGGTGGGTTATCTAAAGCATCCATTGACTGTCCATTGTTGTCATCACTGGATGCTTCCTTTTGCAGCCTACTGCGGGATGACTGCTTGTCTACAACGGCGGCTTCGTGTTTGCAGATCGAGTCTTTAATATTGATGTCTTGTTCAACTGTTGGTCCAGATGGACTATACGCATTGGGTTGTCTTTCGCGCTTAATCATTCTTGACTTATCGTATACATTTTTGATGAACTTAAAGCCGGTCTTTGAGTCTTGTACGCAACTGAAGTTTAGGAGCTTGAAGTGCATTTTGCGTAGTCTGTCATTGATTTTGGTGTTGAAGTTGCAAGCTTGCAAGTACTTAACTGACTCATCTCTGGGACCTCTTTACGAAGAAGGTGCTCTTCCAGCTTTGCGGGAATTGGACTTATCTTATGGGACTTTCTGCCAGTCATCCATGGAGGAACTTCTCACTTGTTGCACCAATCTCACTCATGTTAGCCTGAATGGCTGTGTGAATATGAATGATCTAAATTGGAGCTGCCATGACAGAAAGCTCTCGGAATTCTATAGGGTGGACAGCTCATCTTCTGACGTGGAGCCAACTGGAGGAGCAAATCGTTTACTGAAGAACCTCAACTGTGTCGGCTGTCCAAATATTAGGAAAGTTCTCATTCCCCCGTGGGCACGGTGTTTCCATCTGTCAACTCTGAACCTTTCTCTATCTTCCAATTTGAGGGAAGTTGATGTTTCTTGCTCCAATCTGTGCTTTCTCAATTTAAGCAATTGTTGCTCGTTGGAAGTCTTGACATTGGACTGCCCCAAATTGAGTAGCCTCTTTCTTCAGTCGTGCAACATTGACGAAGAAACTGTTGAAGCTGCCATAGCCAAATGTAGCATGCTCGAGACCTTGGACGTCCGCTTTTGTCCGAAGTTATGGGTTATTAGTGCTTGGGGTTTTAACCATGATCTCAATCCATCTGTTCCATATGTTCGTCTTCGATTCATGTTTGTTCGATTAAACAATAAGTCCATCGTAGTTTATGCTTGGAATGTTTTGTTGGGTTGGTCGAGGATACCCGTAGCAGGGAAGTTAGAATACGACCACAGTGTTTTTGTAAATGTTGTAGGCATATGTGGGTATCCATCAATGAAAAGTGAAGTTATTTTGCTTCAACAATTGTGGAATTATTGA 3096 43.41 MRIWCCLCFTAGEDEAEEGDREITMRKKGVENKGDPEAFLENDDEYGLGLVVDRPARDERSMFRVFEEMRRAMRGDANGHCEAGLTFPALNPWEFHYRVSSRPDCVSSSSSAPGSATRVGENGIEESDRDPHHKRAKVHTDSCCGKDEFERKDSKTEDLEIRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWRAASAHEDFWRCLNFGDRNISVHQFGDMCRRYPNATEVNISGASAVHLLVMKAVASLRNLEVLTLGKGILGDTFFHALADCLTLKRLNVNESTLGNGIQEILINHDQLRHLYLTKCRVICISVRCPQLETLSLKRSNMAQAILNCPLLRDLDIGFCYKLSDAAIRSAATSCPQLESLDVSFCSCISDETIREISRPCPNLHILNASYCPNISLESVELPMLTVLKLHHCEGITSASMTAISQFYMLEVLELHDCGFLTSVSLDLPHLQSIRLVLCRKFADLNLRSVMLSSITVSNCSALHRVNITSNALQKLALQNLEGLITLALQCQSLQEVDLTDCESLWNSICEVFGDGGGCPMLKSLVLDNCVSLTAVRFCSTSLVSLSLVGCRAITTLQLKCPFLERVCLDGCDHLEMASFCPVGLRSLNLGICPKLNELRIKAPHMAILELKGCGGLSKASIDCPLLSSLDASFCSLLRDDCLSTTAASCLQIESLILMSCSTVGPDGLYALGCLSRLIILDLSYTFLMNLKPVFESCTQLKFRSLKCILRSLSLILVLKLQACKYLTDSSLGPLYEEGALPALRELDLSYGTFCQSSMEELLTCCTNLTHVSLNGCVNMNDLNWSCHDRKLSEFYRVDSSSSDVEPTGGANRLLKNLNCVGCPNIRKVLIPPWARCFHLSTLNLSLSSNLREVDVSCSNLCFLNLSNCCSLEVLTLDCPKLSSLFLQSCNIDEETVEAAIAKCSMLETLDVRFCPKLWVISAWGFNHDLNPSVPYVRLRFMFVRLNNKSIVVYAWNVLLGWSRIPVAGKLEYDHSVFVNVVGICGYPSMKSEVILLQQLWNY 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2875946 2882745 - BLOR16094 Blo17g00273 72661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00273 1031 MobiDBLite consensus disorder prediction 122 139 - -
Blo17g00273 1031 SUPERFAMILY F-box domain 164 195 IPR036047 GO:0005515
Blo17g00273 1031 ProSiteProfiles F-box domain profile. 159 205 IPR001810 GO:0005515
Blo17g00273 1031 Pfam F-box-like 167 206 IPR001810 GO:0005515
Blo17g00273 1031 SMART fbox_2 165 205 IPR001810 GO:0005515
Blo17g00273 1031 SMART LRR_CC_2 678 703 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 652 677 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 547 577 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 337 362 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 410 435 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 589 614 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 363 388 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 519 544 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 907 932 IPR006553 -
Blo17g00273 1031 SMART LRR_CC_2 389 409 IPR006553 -
Blo17g00273 1031 PANTHER OS10G0396666 PROTEIN 125 932 IPR044703 GO:0010252|GO:1905393
Blo17g00273 1031 Gene3D Ribonuclease Inhibitor 831 955 IPR032675 -
Blo17g00273 1031 SUPERFAMILY L domain-like 336 670 - -
Blo17g00273 1031 MobiDBLite consensus disorder prediction 104 139 - -
Blo17g00273 1031 SUPERFAMILY RNI-like 185 406 - -
Blo17g00273 1031 Gene3D Ribonuclease Inhibitor 720 830 IPR032675 -
Blo17g00273 1031 Gene3D Ribonuclease Inhibitor 568 719 IPR032675 -
Blo17g00273 1031 Gene3D Ribonuclease Inhibitor 410 567 IPR032675 -
Blo17g00273 1031 Gene3D Ribonuclease Inhibitor 156 409 IPR032675 -
Blo17g00273 1031 SUPERFAMILY L domain-like 611 954 - -
Blo17g00273 1031 PANTHER OS10G0396666 PROTEIN 125 932 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00273 - - - cmo:103493700 1253.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00273 Blo18g00056 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00273 Blo-Chr17:2875946 Blo07g01108 Blo-Chr7:30985269 6.55E-11 dispersed
Blo17g00273 Blo-Chr17:2875946 Blo18g00261 Blo-Chr18:2767477 2.01E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00273 Blo_Chr17 FPKM 12.752125 17.720831 15.578038 17.0179 14.239716 12.820457 15.199984 13.336802 12.105588 12.113285