Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00274 ATGAACAAGGACAAGGATAGAATATTGGATAATTTGGACGCCGCCCGTGGAACTCCTCGGCGGAATCGGCCGTCGCCCACTCCGTCAGGGAATCAGAAGTCGAGGGTGACAAATTCTCAAGCGGAAAAATGTTTTTCCGATCGATTTTGGGGTGTTTTCAATGACTGTATGAGCAAGGGGTCCACCGTCACAGCCAATCAAAACCAGTTAATAAACCAGAATGGTTCAACACCGGCTTCTGACGCTAAGAGTGCCGGAGGAACGTCTGATCTAGAGAGAGAAGTGCAGAAGCAGAAGGAATTTGGAATGATTTACAGAAAGAGAATGGAAAGAACGCAGGAATATCTGAAACACTGCCTTCAAGTAGCTCAAGACAATGGCTTCCTGCACCTCATTACACCCGATGATCAAACCACACAACGCCGGCCGACTTTCGACTGCACTTCTCAACTTCCTCCCTCTCCGATTCATCTTCACCCAGAACTCGCCCGTCTCACTCATCAAGCCAAGCTCAACGGCTGGTTCATCCACCCCCACGAGATTGAAATGGGAGAGAAAGTCGGGCAAGGCAGTACTGCAAATGTGTACAGAGGTAGGTGGAGAGGGCTTGAAGTTGCAGTGAAATGCATGTACCCAGATGTTTTTCTGGAGAACGACAATGGCGTCACTTTTTTCGCTCAAGAGCTGGAGACGTTAGCCAGACAGCGCCACCCGTTTGTGCTTCAGCTCATCGGTGCGTGTCTCCGCCCGCCAGACCACGCTTGGGTGGTCACGGAGTTTTTGCCCATGACCCTTAAAGAGTGGCTTCACGGCGCCGACCGCCGGCGGCGAAAGAGGGCCGTTCCCCTTCCTTCCTTGACAGAGCGAATAACCAGAGCTCTGGAGATTTCCCAGGCGATGCAGTATCTTCACGAGCAAATACCTAAAGTTATCCACCGAGATTTAAAACCCAGTAATATTTTTTTGGACGAAGCCATGCATGTAAAACTTGCAGACTTCGGAAATGCCCGTTTTCTCTCCGACGAACAAATGGCGCTCACCGGAACTTACGTATACATGGCGCCGGAGGTCATTCGATGCGAGCCTTACGACGAAAAAAGTGATGTTTACAGCTATGCGATTATACTGAACGAGCTCCTGACCGGAGAACATCCTTATATAGAAACAGATTACGGCGCAGCCAAGATTGCCATGGAAGTTGCAGAAGGTAGCGTAAGGCCGGCCCTCGTTAAGGATGATGGGCAAATGGGAGAGATTATCGACCTCATCCGCCTTGCTTGGGATGACAACGCTTCGATCAGACCATCTTTTTCTATGATCACCTCTGTTCTGACAAAAGTTCATCAGAAACTTCTTCGAGTTTCTTGA 1368 49.63 MNKDKDRILDNLDAARGTPRRNRPSPTPSGNQKSRVTNSQAEKCFSDRFWGVFNDCMSKGSTVTANQNQLINQNGSTPASDAKSAGGTSDLEREVQKQKEFGMIYRKRMERTQEYLKHCLQVAQDNGFLHLITPDDQTTQRRPTFDCTSQLPPSPIHLHPELARLTHQAKLNGWFIHPHEIEMGEKVGQGSTANVYRGRWRGLEVAVKCMYPDVFLENDNGVTFFAQELETLARQRHPFVLQLIGACLRPPDHAWVVTEFLPMTLKEWLHGADRRRRKRAVPLPSLTERITRALEISQAMQYLHEQIPKVIHRDLKPSNIFLDEAMHVKLADFGNARFLSDEQMALTGTYVYMAPEVIRCEPYDEKSDVYSYAIILNELLTGEHPYIETDYGAAKIAMEVAEGSVRPALVKDDGQMGEIIDLIRLAWDDNASIRPSFSMITSVLTKVHQKLLRVS 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2885850 2887593 - BLOR16095 Blo17g00274 72662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00274 455 PIRSF ILK 156 454 - -
Blo17g00274 455 PIRSF ILK 54 115 - -
Blo17g00274 455 MobiDBLite consensus disorder prediction 22 39 - -
Blo17g00274 455 MobiDBLite consensus disorder prediction 71 95 - -
Blo17g00274 455 Gene3D Phosphorylase Kinase; domain 1 163 261 - -
Blo17g00274 455 SMART serkin_6 181 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00274 455 MobiDBLite consensus disorder prediction 1 17 - -
Blo17g00274 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Blo17g00274 455 Pfam Protein kinase domain 183 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00274 455 ProSitePatterns Protein kinases ATP-binding region signature. 187 208 IPR017441 GO:0005524
Blo17g00274 455 CDD STKc_MAP3K-like 187 444 - -
Blo17g00274 455 Gene3D Transferase(Phosphotransferase) domain 1 263 454 - -
Blo17g00274 455 PANTHER OS09G0443600 PROTEIN 82 451 - -
Blo17g00274 455 SUPERFAMILY Protein kinase-like (PK-like) 157 443 IPR011009 -
Blo17g00274 455 ProSiteProfiles Protein kinase domain profile. 181 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00274 455 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 82 451 - -
Blo17g00274 455 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00274 - - - pvy:116124708 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00274 Blo-Chr17:2885850 Blo13g00492 Blo-Chr13:26099919 2.33E-46 dispersed
Blo17g00274 Blo-Chr17:2885850 Blo16g00098 Blo-Chr16:2364835 3.56E-47 transposed
Blo17g00274 Blo-Chr17:2885850 Blo04g00587 Blo-Chr4:5061539 3.72E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g143 . . . . . Bpe02g00332 . . . . . . Car09g00308 . . . Cpe06g00255 . . . . . . . Cla05g01617 Cam05g1730 Cec05g1735 Cco05g1791 Clacu05g1719 Cmu05g1603 Cre05g1730 Cone4ag1692 . . . . . . . Blo17g00274 . . . Bpe14g00279 . . Bma02g00338 . . Cmo09g00582 Cma09g00361 . . . . . Bhi09g03092 . . . . . . . . . . . . . . . . Cme07g00188
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010809 0 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84787 PF00069 Pkinase 4.70E-45 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00274 Blo_Chr17 FPKM 12.775224 16.594387 24.539654 22.63468 12.169444 12.221053 12.405516 27.521721 28.007 29.268541