Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00275 ATGAGATCAGAGTTGTCGTCTCTTGTCACCTCCAAGATTCCGAATTTCCCCACCTCTCCTCTTCCTCTTCCTCCTTCCCTTTACTTGAAACCCTTTTCTTATCAACCCTCTCGGCCCGTCTCAATTGCACCCACCATTACTACAAAACACAATAGTATCAACACCAAATTTCGCTCTCCACAGCCTAATTTCTCTTCTGCCATGGCTTCCTCTTACCACCATGAGCGAGCGAGGGCCCCTCAGGCTCTTCCGTTGCCAACTCCTCCCGTTACCAAATTTAAGATTGGACTCTGCCAATTGTCGGTCACCGCTGATAAGCAACGGAACATTGCCCATGCACGGAAGGCCATTGAGGAGGCCGCGGAAAAGGGGGCATTGCTTGTTGTTCTTCCTGAAATATGGAATGGTCCTTATTCAAATGAAAGCTTCCCCGTTTATGCCGAGGATATTGATGTGGGTGGTGATGCCTCTCCTTCAACAGCTATGCTATCTGAAGTTTCTCGTCGTTTAAAGATCACAATTGTAGGTGGCTCCATAGCTGAGCGTTCTGGAGATCGTCTGTATAATACCTGTTGCATTTTCGGTGCAGATGGAAAGCTGTTAAATAAACACAGAAAGCTACATCTTTTTGACATTGATATCCCTGGCAAGATAACATTTATTGAATCAAAGACTCTTACAGCTGGGCAGACTCCTACTGTTGTAGACACAGAGGTGGGCCGTATTGGCATTGGAATCTGTTACGACATTCGTTTTCAGGAACTAGCAATGATATATGCTGCAAGAGGTGCACATTTGATATGTTATCCCGGGGCATTCAACATGACTACCGGACCGTTGCACTGGGAGTTGCTACAGCGGTCAAGGGCCGTAGATAATCAGTTGTTTGTGGCCACTTGTTCACCTGCTCGGAATGCCGGAGCTGGCTATGTGGCGTGGGGCCACTCAACCCTTGTTGGACCAATTTATCGCTCTATCGACTGCGGCGAAAAGCGGAACGACGAGCTGAAAATTTTCCGAGAAAGAATGGCGGAAAAACAGAGCAGAGGCAGAGGAAAGATTCGCAGAGAAACGGAAGAGGAGGTGAATCTTCGCCGAGCTTGCTTGATCCACAAATGGATGGATAAGACGGTTAGAAGGAATGACTGTGATCAAGATGTTCTGTTTTGGAGTTCAACTTCATCTGATTCCAGTTCAGGAGGATTCTCTTGGTCAGATTCTGAGTCCATTTTTGCTTCGAAATCAACGCCGTTGTCATGCTTCACTCCGGCGAGGCCGAAGCCAATTCGAACGTCCACCTCATACCGGCCGGGAAGTTCAGAGAAGAAGCTGAGAGATTGGGAAGTGTTCGATGATTATCAATACAGTTCTGCAACAGAGCAAACCCCAAAGCGGGGAGAAGGAATTATCAAGACTAAATCAAAAGCATTAAAAATCTACAGCAACCTAAAGAAGGTGAAGCAGCCGATTTCACCCGGAGGTCAGCTATCACGCTTTCTCAATTCTCTCTTCACTTCTGGAAACGCAAAGAAGACTAGAAACCCATCAATGGCAGAGAAGGCAAGCGAAGCGTCAGCATGTTCATCGGCGTCCTCGTTTTCTCGTTCTTGTTTAAGCAAAAACTCTCCCTTATCAAGAGAGAAATTGCGGAATGGCGTTCAAAGGACTGTTCGTTTTTCCCCTGTAAGTGTCATAGTAGATGAAGATTGCAGACCTTGCGGCCATAAATGCTTGTTTGAAGACGACGATTCAACTCTAATGCCAGTTACACTACCAACTGAGTGGAGAATCGCCTCCTCGTCGACCAGAAAGAACAACGACGAGCCAATAGAGCAGAAGAAGAAGGAATCTCAACAAATCCAGAAGCAAAACGATTCAGTTTTCAGAGAATTTTCTCTTAACGACGACGAAGACGACGACGAGGACGCAGCAAGCTATTCGAGTTCAGATCTTTTCGAGCTCGACCACCTTTCGGTAATTGGCGGCGAAAGATTCTACGAAGATCTTCCAGTCTACGAAACTACTCGTATCAACACTAATCGCGCCATTGCTAATGGCTTCTTAATCTAG 2070 46.47 MRSELSSLVTSKIPNFPTSPLPLPPSLYLKPFSYQPSRPVSIAPTITTKHNSINTKFRSPQPNFSSAMASSYHHERARAPQALPLPTPPVTKFKIGLCQLSVTADKQRNIAHARKAIEEAAEKGALLVVLPEIWNGPYSNESFPVYAEDIDVGGDASPSTAMLSEVSRRLKITIVGGSIAERSGDRLYNTCCIFGADGKLLNKHRKLHLFDIDIPGKITFIESKTLTAGQTPTVVDTEVGRIGIGICYDIRFQELAMIYAARGAHLICYPGAFNMTTGPLHWELLQRSRAVDNQLFVATCSPARNAGAGYVAWGHSTLVGPIYRSIDCGEKRNDELKIFRERMAEKQSRGRGKIRRETEEEVNLRRACLIHKWMDKTVRRNDCDQDVLFWSSTSSDSSSGGFSWSDSESIFASKSTPLSCFTPARPKPIRTSTSYRPGSSEKKLRDWEVFDDYQYSSATEQTPKRGEGIIKTKSKALKIYSNLKKVKQPISPGGQLSRFLNSLFTSGNAKKTRNPSMAEKASEASACSSASSFSRSCLSKNSPLSREKLRNGVQRTVRFSPVSVIVDEDCRPCGHKCLFEDDDSTLMPVTLPTEWRIASSSTRKNNDEPIEQKKKESQQIQKQNDSVFREFSLNDDEDDDEDAASYSSSDLFELDHLSVIGGERFYEDLPVYETTRINTNRAIANGFLI 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2892978 2902124 - BLOR16096 Blo17g00275 72663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00275 689 Coils Coil 610 630 - -
Blo17g00275 689 Pfam Carbon-nitrogen hydrolase 95 324 IPR003010 GO:0006807
Blo17g00275 689 MobiDBLite consensus disorder prediction 606 620 - -
Blo17g00275 689 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 93 364 IPR003010 GO:0006807
Blo17g00275 689 CDD nit 94 321 IPR045254 GO:0016811
Blo17g00275 689 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 58 324 - -
Blo17g00275 689 MobiDBLite consensus disorder prediction 599 623 - -
Blo17g00275 689 PANTHER NITRILASE-RELATED 58 324 - -
Blo17g00275 689 Coils Coil 103 123 - -
Blo17g00275 689 Gene3D - 90 354 IPR036526 -
Blo17g00275 689 SUPERFAMILY Carbon-nitrogen hydrolase 90 326 IPR036526 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00275 K13566 NIT2, yafV; omega-amidase [EC:3.5.1.3] - fve:101304110 480.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00275 Blo18g00264 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00275 Blo-Chr17:2892978 Blo05g00048 Blo-Chr5:400777 1.98E-31 dispersed
Blo04g01390 Blo-Chr4:33362701 Blo17g00275 Blo-Chr17:2892978 2.94E-13 transposed
Blo08g00056 Blo-Chr8:457991 Blo17g00275 Blo-Chr17:2892978 4.47E-12 transposed
Blo18g00264 Blo-Chr18:2809754 Blo17g00275 Blo-Chr17:2892978 6.53E-117 transposed
Blo01g01451 Blo-Chr1:53606681 Blo17g00275 Blo-Chr17:2892978 8.51E-63 wgd
Blo12g01026 Blo-Chr12:28158363 Blo17g00275 Blo-Chr17:2892978 3.71E-70 wgd
Blo17g00275 Blo-Chr17:2892978 Blo18g00263 Blo-Chr18:2806095 5.25E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g141 . . . . Bpe02g01554 . . . . . Cma01g01709 . Car09g00306 . . . Cpe06g00254 . . . . . . . Cla05g01615 Cam05g1728 Cec05g1731 Cco05g1789 Clacu05g1717 Cmu05g1601 Cre05g1725 Cone4ag1690 Cone7ag1609 . Cone20ag0282 Lsi04g01397 . . . Blo17g00275 Blo18g00264 Bda01g01342 Bda13g01588 Bpe14g00277 . . Bma02g00546 Sed06g0788 Cmo01g01803 Cmo09g00357 Cma09g00358 . Car01g01327 . . Cpe02g00284 Bhi09g03094 Tan01g3460 Cmetu01g2122 . Hepe01g1910 Mch11g0442 . . . . . . . . . . . Cme07g00191
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005521 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00275 Blo_Chr17 FPKM 7.08779 6.562271 5.130149 5.682541 5.035549 5.566162 6.551744 2.468453 2.653542 2.27326