Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00276 ATGGACGGGGCTGTTCCGTATAATCCGCGTACGGTCGAGGAGGTGTTTACGGATTTCAAGGGTCGTAGAGCTGGCATGCTTAAAGCCCTCACTACTGATGTCGAAAGTTTCTACCACCAGTGCGACCCCGAAAAAGAAAATCTGTGTCTTTATGGATATCCTGGTGGGCAATGGGAAGTCAATTTACCTGCCGAAGAGGTCCCTCCAGAGCTTCCAGAACCAGCATTAGGAATTAATTTTGCCAGAGATGGGATGGAAGAAAAAGATTGGTTATCCCTAGTTGCTGTTCACAGTGATATCTGGTTAAATGCTGTTGCCTTTTATTTTGGAGCTAGGTTCGGATTTGACAAAAATGATAGGAAACGCCTTTTTAATATGATCAACGAGTTTCCGACAATATTCGAGGTCGTGACAGGTACAGCCAAAAAACAAGCAAAAGATAAATCATCAGTTTCGAATCTCAGCAGTAACAAATCCAAAACTACTGCAAAGGGTTCTGAATCTCATGAAAAGCCAATGCAAATGAATGACGAGGATGAAGAGGGGTTGGAAGAGGAAGACAATGAAGAGCTTGGAGACACACTTTGCGGTGCTTGTGGGGAGAACTATGCATCAGATCAATTCTGGATTTGCTGTGACATCTGTGAGGTGTGGTTCCATGGGAAGTGTGTCAAAATCACCCCAGCAAAGGCAGAGCACATTAAGCAGTACAAATGTCCTTCTTGCAGCAACAAGAGAGCTCGAACTTGA 750 44.27 MDGAVPYNPRTVEEVFTDFKGRRAGMLKALTTDVESFYHQCDPEKENLCLYGYPGGQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDIWLNAVAFYFGARFGFDKNDRKRLFNMINEFPTIFEVVTGTAKKQAKDKSSVSNLSSNKSKTTAKGSESHEKPMQMNDEDEEGLEEEDNEELGDTLCGACGENYASDQFWICCDICEVWFHGKCVKITPAKAEHIKQYKCPSCSNKRART 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2903439 2905954 + BLOR16097 Blo17g00276 72664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00276 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Blo17g00276 249 SUPERFAMILY FYVE/PHD zinc finger 187 246 IPR011011 -
Blo17g00276 249 MobiDBLite consensus disorder prediction 147 187 - -
Blo17g00276 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Blo17g00276 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Blo17g00276 249 SMART PHD_3 195 243 IPR001965 -
Blo17g00276 249 PANTHER CPG BINDING PROTEIN 4 248 IPR045104 GO:0006355|GO:0042393
Blo17g00276 249 Pfam PHD-finger 196 245 IPR019787 -
Blo17g00276 249 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 248 - -
Blo17g00276 249 CDD PHD_AL_plant 195 245 IPR044104 -
Blo17g00276 249 MobiDBLite consensus disorder prediction 147 162 - -
Blo17g00276 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g01023 Blo17g00276 CCT
Blo01g01452 Blo17g00276 CCT
Blo12g01023 Blo17g00276 ECH
Blo01g01452 Blo17g00276 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00565 Blo-Chr1:6216102 Blo17g00276 Blo-Chr17:2903439 4.53E-100 dispersed
Blo02g01188 Blo-Chr2:43595719 Blo17g00276 Blo-Chr17:2903439 1.41E-102 dispersed
Blo03g00275 Blo-Chr3:5650017 Blo17g00276 Blo-Chr17:2903439 3.29E-111 dispersed
Blo12g00390 Blo-Chr12:20605029 Blo17g00276 Blo-Chr17:2903439 5.03E-86 dispersed
Blo13g00799 Blo-Chr13:30718106 Blo17g00276 Blo-Chr17:2903439 9.07E-91 dispersed
Blo16g00972 Blo-Chr16:37967267 Blo17g00276 Blo-Chr17:2903439 1.11E-96 dispersed
Blo01g01452 Blo-Chr1:53610034 Blo17g00276 Blo-Chr17:2903439 1.81E-89 wgd
Blo12g01023 Blo-Chr12:28150001 Blo17g00276 Blo-Chr17:2903439 2.00E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13505 PF12165 Alfin 2.40E-67 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00276 - - vvi:100247536 420.239