Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00278 ATGGATTTTGGATTCATTGTATCTGATTTTCCTCTCTACTCCTCTCTTCGCCATTTAATGGATTTGCCTGGCGGGATCGAGAAGTCATCCAACAAGCAGACTCGGAGTAACGTCCGCGACGCCAAGGCCATGGCTGCCACTCCGGCTGACGTCAAGGAATATCCTGATTCCTACGTCTTCATCATCGACATGCCAGGACTGAAAACTGGGGATATCAAGGTCCAGGTGGATGACGAGAATCTGCTTCTGATTAGCGGCGAGAGAAAGCGGGAGGAAGAGAAAGAGGATGCTAAGTTCCTCCGAATGGAGAGGGGGATCGGCAAGTTCATGAGAAAGTTTGTCCTGCCGGAAGACTCAAACACCGACGCCGTGTCAGCGGTGTGTCAGGACGGCGTGCTCAGCGTGACAGTGGAGAAACTACCTCTGCGAAAGCCGAAGAAGCCCAGAACAATACAAGTAGAGATTGCATAA 471 51.17 MDFGFIVSDFPLYSSLRHLMDLPGGIEKSSNKQTRSNVRDAKAMAATPADVKEYPDSYVFIIDMPGLKTGDIKVQVDDENLLLISGERKREEEKEDAKFLRMERGIGKFMRKFVLPEDSNTDAVSAVCQDGVLSVTVEKLPLRKPKKPRTIQVEIA 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2948956 2949426 + BLOR16099 Blo17g00278 72666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00278 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 154 IPR002068 -
Blo17g00278 156 SUPERFAMILY HSP20-like chaperones 33 148 IPR008978 -
Blo17g00278 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 155 - -
Blo17g00278 156 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 155 - -
Blo17g00278 156 Gene3D - 12 155 IPR008978 -
Blo17g00278 156 Pfam Hsp20/alpha crystallin family 50 153 IPR002068 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00278 K13993 HSP20; HSP20 family protein - tcc:18588112 209.534
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01454 Blo17g00278 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00404 Blo-Chr12:21014796 Blo17g00278 Blo-Chr17:2948956 2.53E-21 dispersed
Blo14g00669 Blo-Chr14:14714742 Blo17g00278 Blo-Chr17:2948956 2.10E-53 dispersed
Blo01g01454 Blo-Chr1:53632238 Blo17g00278 Blo-Chr17:2948956 2.86E-65 wgd
Blo12g01022 Blo-Chr12:28146148 Blo17g00278 Blo-Chr17:2948956 4.99E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g132 Blo01g01454 . . . . . . . . . Cma01g01713 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01402 . . . Blo17g00278 . . Bda13g01590 . . . . . . . . . Car01g01331 . . . . . . . . . . . . . . . . . . . . Cme07g00196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001297 3 2 4 4 3 2 2 2 2 1 1 2 3 2 2 3 2 3 3 2 1 2 1 3 2 2 3 3 2 7 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00278 Blo_Chr17 FPKM 25.90921 26.207258 26.922253 28.216942 35.32975 34.198273 34.633236 21.222477 19.806547 19.654585