Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00279 ATGAAATGGAGTAGACGAGATACAGATCTTAATAGAATGGTTTCGGATTACGTTGACAATGGCGTCAATCTCCGTCAGAAACTGAGGAATGACGAGAAACCCATAATTCTTTATTTCCTTTATCGGCTCCGTGTAAGGAATTTGATTAGACCGGAGAGGGAGGAGGGGTCGGCTTCTGCGTCTTCGCCGGCGATGGGATTAGAAAAAGAGAAGAAAAAGGGTTCCTCTTCTTCTGCTTCGTCAACATCGCCCTGTGCTAATCTCAGAGCAGCTTACAACAGTTGCTTCAACCGATGGTACTCCGAGAAGTTTGTGAAAGGTCAATGGGAGAAACAGGATTGCGTTACTGAGTGGAAGAAATATCGAGCTTGTCTTTCTGAAAATCTTGACGATAAGCATTTGAGTCGCTTCCTGGAAGCCGAACTATCAGTGGATTCACCTAATCAACTAGACGATGGTGGTGGACTATGA 471 44.8 MKWSRRDTDLNRMVSDYVDNGVNLRQKLRNDEKPIILYFLYRLRVRNLIRPEREEGSASASSPAMGLEKEKKKGSSSSASSTSPCANLRAAYNSCFNRWYSEKFVKGQWEKQDCVTEWKKYRACLSENLDDKHLSRFLEAELSVDSPNQLDDGGGL 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 2951942 2952623 - BLOR16100 Blo17g00279 72667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00279 156 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 82 132 - -
Blo17g00279 156 MobiDBLite consensus disorder prediction 52 84 - -
Blo17g00279 156 PANTHER TP53-REGULATED INHIBITOR OF APOPTOSIS 1 71 148 IPR007918 -
Blo17g00279 156 Pfam Uncharacterised protein family (UPF0203) 80 140 IPR007918 -
Blo17g00279 156 SUPERFAMILY Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 78 133 IPR036811 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00279 K17968 TRIAP1, MDM35; TRIAP1/MDM35 family protein - mnt:21387309 130.568
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g120 . . . . . . . . . Cmo12g00592 . . . . Sed08g1786 . . Bhi04g01488 Tan02g1610 Cmetu03g0847 . Hepe08g1408 . Lcy13g2198 . . . . . . . Cone4ag1680 . . . . . . . Blo17g00279 . . Bda13g01592 Bpe14g00272 . . Bma02g00537 . . . . Cma12g00653 . . . . . . . . . . . . . . . . . . . . Chy03g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012856 1 1 1 3 1 0 2 0 0 1 0 0 2 1 1 2 0 2 0 0 1 1 1 1 1 0 1 1 2 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00279 Blo_Chr17 FPKM 18.603373 21.266874 16.970108 17.221611 20.65066 19.44854 19.348803 28.272551 27.769392 28.289968