Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00285 ATGGCAGATGTAACTGCTAAAGAGGGAGAACCACAGACAAACACCAATGGCGATGGTTCTTCGTCGTCCTCATCGTCACCGCCCCGACCAAGGGAGGGGCTGAACGAGGTGGGTCCGCCTCCATTTCTCGTGAAGACTTTCGAGATGGTGGAAGATACTGCGACGGACGCCATTGTTTCCTGGAGCGAAGCTCGCAATAGCTTCATCGTTTGGGATTCCAACAAACTCTCCACCGACCTCCTCCCTCGCTACTTCAAGCACAGTAACTTCTCCAGCTTCGTTCGACAGCTCAACACTTATGGTTTTAAAAAGATCGATTCTGATCGTTGGGAATTTGCAAACAAAGGGTTTCTAGGAGGTCAAAAGCATCTGCTGAAAACGATTAAGAGAAGAAGGAATGTGGCGCAGAATCTGCATCAAGGAGGAGATGCAGAGGCAGCTTGCGTGGAGCTAGGACAGTACGGATTGGAAGGGGAGTTCCAGAGATTGAGGAGAGACAGAAACATATTAATGGCTGAAATTGCTAGCATGAGACAGCGACAGAAGAATGCGAAAGAATACATAACTGCCATGGAAGAAAGGATCCGAAAAACAGAGATGAAACAGCAGCGTATGTTGATGTTCCTTTCGAAAGCACTCGCTAACCCAAATTACATTCAGAAATATTTCCAGAAGAGTGCTCAGAGGAGAGAGCTTCGGGGGGTTGAAACTGGACGAAGGAGAAGCCTGACAGCGAGCATGGGTGCGGAGAATTCGCAAAAGGAAGCTTCATCAATGGCGCTAGGCGGTGGGATAGAGATAGAGAAGATCATCTATGTTGATTTAGAGAAGGAATCAGGCAGTGATATCAAGGATGTAAATGAAGTTTCCGCACAAAAAACCAGTTCTAGCAATCTGGAATCTGCTGCAGAGGAAATGTGGGATGAACTTTGGTCCGATTATCTTCTTGGCACCCAATCAGAAGAGAACATCCAGGTGGAAGCGTTATTGGAAACAGAATCTGATTGGAGAGAGGAATTAGACGCCCTGGAAGATCAAATAAACTGTTAA 1050 46.76 MADVTAKEGEPQTNTNGDGSSSSSSSPPRPREGLNEVGPPPFLVKTFEMVEDTATDAIVSWSEARNSFIVWDSNKLSTDLLPRYFKHSNFSSFVRQLNTYGFKKIDSDRWEFANKGFLGGQKHLLKTIKRRRNVAQNLHQGGDAEAACVELGQYGLEGEFQRLRRDRNILMAEIASMRQRQKNAKEYITAMEERIRKTEMKQQRMLMFLSKALANPNYIQKYFQKSAQRRELRGVETGRRRSLTASMGAENSQKEASSMALGGGIEIEKIIYVDLEKESGSDIKDVNEVSAQKTSSSNLESAAEEMWDELWSDYLLGTQSEENIQVEALLETESDWREELDALEDQINC 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3018851 3020004 - BLOR16106 Blo17g00285 72673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00285 349 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo17g00285 349 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 21 326 - -
Blo17g00285 349 SUPERFAMILY Winged helix DNA-binding domain 38 131 IPR036390 -
Blo17g00285 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 326 IPR027725 -
Blo17g00285 349 MobiDBLite consensus disorder prediction 1 38 - -
Blo17g00285 349 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo17g00285 349 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo17g00285 349 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo17g00285 349 MobiDBLite consensus disorder prediction 233 258 - -
Blo17g00285 349 Coils Coil 326 346 - -
Blo17g00285 349 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo17g00285 349 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo17g00285 349 Coils Coil 160 180 - -
Blo17g00285 349 Gene3D - 35 132 IPR036388 -
Blo17g00285 349 MobiDBLite consensus disorder prediction 8 30 - -
Blo17g00285 349 MobiDBLite consensus disorder prediction 244 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00285 K09419 HSFF; heat shock transcription factor, other eukaryote - csin:114257644 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00555 Blo-Chr1:6147516 Blo17g00285 Blo-Chr17:3018851 7.12E-70 dispersed
Blo06g00420 Blo-Chr6:24232472 Blo17g00285 Blo-Chr17:3018851 1.89E-34 dispersed
Blo16g00980 Blo-Chr16:38102549 Blo17g00285 Blo-Chr17:3018851 3.88E-70 dispersed
Blo06g01033 Blo-Chr6:33651322 Blo17g00285 Blo-Chr17:3018851 2.20E-55 transposed
Blo02g00985 Blo-Chr2:38010572 Blo17g00285 Blo-Chr17:3018851 4.94E-28 transposed
Blo17g00285 Blo-Chr17:3018851 Blo18g00282 Blo-Chr18:2958605 6.62E-161 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006629 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13506 PF00447 HSF_DNA-bind 5.50E-31 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00285 Blo_Chr17 FPKM 2.779981 2.300327 1.615684 1.514448 1.359983 0.288177 0.980134 0.06743 0.057145 0.0