Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00292 ATGGTCGGACAAAGCTCTATGATTGCTGATTACACTTCGTTAGACCTTAATCATCAGAATGATCATGTCTTAAACATGGGTTTTAATCTTGATCGATTGGCAGATGGGCTGCCCATTCCTGCTGTTTCATTTTCTACTCTTCTTCCTCCTCCTTGCTGTTTTCTTCAGGAAACTTCTAGCTGTGTCTCCAATGGCGGCTCAAATGTGTCGAATTCTTCGTTTTTCACTTCTGACTATCAAAGGTGTGATGAAGCTCTTGGTGATATGATCTTTAAGTGGGAAACCAACAATGCTCTTGCTTCTTTGCCTGTTGGAACTGGGTTTCAGCCTCATTCTTCCGTTGGAAATCTGGATTCTACTGCAGTGATTGATCATTCTCGTGTTTTTCCAAATTTATGGAGCAAGCTCTCTCTAAGTCTAGCCACATCGTTGCCTTCTCTCTCTAGAGAATCAGATAATCCGACCCTATTCTCGCAGATTAGCTTTTCAGACGAATCGAACCATAGCTTTGACGAAGCTTTTCCGTTTTCGCAAGTTCTAGCAGGGTCGAGATATCTGTCTGTAATTCAAGAAATTCTCTCTGAAACTGCTAGCTATTCACTTGAAAACCTGGACCAACTGGGATTTTCAACTTCCCCCATTGGAGCGATACCATATCCTTCTTGTTTTCTTTCGAGGAAGGTAGTTTCACAGTCGGATCATGATCTCATTACTCAATCTGAAACTCAGATTGATCCTACATTGCTAAGGACCTCTGATTTGAAGAAAACCCAGCTTCTTACTCTTCTGCAATTGGTCGATGATCGATACAGTCAATGGTTAGACGAGATTCGTACTGTTATATCGGCCTTCAATGCCATTACTGAGTTGGATCCAGCTTTCCACACCCACTTCGCTCTGCAAACGATGTCTTTTGTATATCGAAATCTTAGGGAACGAATTAACAATTGCATTCTGGCAATGGAGGCTCATTCTAGTTATAACCAACCATGCTTGAAGTCATTTGAGAAGTCATTCATCCAAAAACAATGGGCTCTTCAGCAGCTGAAAAGAAAAGAGCACCAATTATGGAGGCCTCAGAGGGGGTTGCCGGAAAAATCTGTCTCCGTTTTACGAGCATGGATGTTTCAGAATTTTCTCCATCCGTATCCTAAAGATACAGAGAAGCATTTACTTGCAGTGAAAAGTGGATTGACAAGAAGTCAGGTATCCAACTGGTTTATAAATGCCCGAGTCCGGCTATGGAAACCGATGATAGAGGAAATGTACGCCGAAATGAACAGAAGAAAGTCCGAGCCGAATTGGAGATGGAACGGGGAGAAGGCAGTCGACTATGAACCATGA 1344 42.49 MVGQSSMIADYTSLDLNHQNDHVLNMGFNLDRLADGLPIPAVSFSTLLPPPCCFLQETSSCVSNGGSNVSNSSFFTSDYQRCDEALGDMIFKWETNNALASLPVGTGFQPHSSVGNLDSTAVIDHSRVFPNLWSKLSLSLATSLPSLSRESDNPTLFSQISFSDESNHSFDEAFPFSQVLAGSRYLSVIQEILSETASYSLENLDQLGFSTSPIGAIPYPSCFLSRKVVSQSDHDLITQSETQIDPTLLRTSDLKKTQLLTLLQLVDDRYSQWLDEIRTVISAFNAITELDPAFHTHFALQTMSFVYRNLRERINNCILAMEAHSSYNQPCLKSFEKSFIQKQWALQQLKRKEHQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRKSEPNWRWNGEKAVDYEP 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3076413 3078114 + BLOR16113 Blo17g00292 72680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00292 447 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Blo17g00292 447 CDD homeodomain 357 418 IPR001356 GO:0003677
Blo17g00292 447 SUPERFAMILY Homeodomain-like 359 427 IPR009057 -
Blo17g00292 447 Pfam Associated with HOX 179 314 IPR006563 -
Blo17g00292 447 Gene3D - 360 435 - -
Blo17g00292 447 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 49 433 - -
Blo17g00292 447 SMART prehox3 174 316 IPR006563 -
Blo17g00292 447 PANTHER HOMEOBOX PROTEIN ATH1 49 433 - -
Blo17g00292 447 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Blo17g00292 447 SMART HOX_1 357 421 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00292 Blo-Chr17:3076413 Blo09g00467 Blo-Chr9:15843844 5.74E-47 dispersed
Blo17g00292 Blo-Chr17:3076413 Blo12g00539 Blo-Chr12:23334895 5.18E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13507 PF07526 POX 2.30E-24 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00292 - - qlo:115971200 350.903