Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00301 ATGGAGACTGTGTCAGAGAAAAGATTTCCAGTAAATGCAAATGATTATAAGTTGTACGAAGAAGTTGGTGAAGGTGTCAGCGCCACTGTTTACAGGGCTCTCTGCATACCACTAAATGAGATTGTTGCTATAAAGGTTCTAGATTTGGAGAAGTGCAATAATGACCTGGATGGTATAAGGAGAGAGGTACAAACAATGACCTTGATTTATCATACAAATGTACTACGAGCACATTGTTCTTTCACAACTGGCCACAACCTTTGGGTTGTGATGCCATACATGGCTGGAGGATCATGTCTTCATATAATGAAATCTGCCTATCCAGAAGGTTTCGAAGAGCCTGTTATAGCTACTGTTTTGCGTGAGGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGCCACATTCATAGGGATGTGAAGGCTGGGAATATTTTAGTTGATTTCGATGGATCAGTCAAGCTGGCTGACTTTGGTGTGTCAGCTTGTATGTTTGATGCCGGAGACAGACTAAGATCAAGAAATACTTTTGTTGGAACTCCTTGCTGGATGGCTCCGGAAGTTATGCAGCAGTTGCATGGATATGATTTTAAGGCAGACATCTGGTCATTGGGAATAACAGCGCTTGAACTTGCTCATGGTCATGCTCCATTTTCCAAGTATCCACCAATGAAAGTTTTGCTAATGACACTACAAAATGCTCCTCCTGGGCTCGACTATGAACGAGACAAGAGATTCTCAAAGTCCTTCAAGGAGATGGTGGCGTTGTGCTTAGTAAAGGATCCGAAGAAACGTCCAACTTCTGAGAAGCTTCTTAAACATCCTTTTTTCAAACATGGACGCCCAAATGACTATATAGCTCGCACAATTCTTGAGGGCCTTGCTCCTTTGGGAGATCGTTTTAAGATGCTGAAGGCAAAAGAGGCTGAGCTTCTTGTGCAGAACAAAGCTCTGTACGAAAATAAGGATCAATTATCACAGCAAGAGTACATTCGAGGAATCAGTGCTTGGAACTTCAATCTTGAGGATTTAAAAAATCAGGCTGCCCTTATTCAGGATGTTAATGTTGCATATGCAGAAGATCCAGACTTTGGTAAGATGCAACAAGAGAAGAATGATTCTTCTGGCTTCCACGTCGAGAGGTCATACATTGAGAAAATGAAACATTTAAATCCCAGACCTAGTCAGGAGGATGAGTTCAATGAGCTTCATGATTTGTCAAGTTCACTTGCTTCAATGCCAGCTAAGCCTCTTGAAGCACTTAGGCATGGCTATTTTTGTTGTTTTGACATTTGTGATGATGATATAAAATCAATAATTCCACGAGCTTTGGATCAAGAAAATGGATCTGAGGATGAGTGTTCAGGTCAAAATAGTTCATCACGTCATGATATGCTTGAGCAGAAAAAGTACATTAGTGACTCGCTCCTTCCTGATAGAGCCATTTCTTCCAAAAAGGTTACTAACGATGGTGATAGGGATAATCTTCAGTCAAAACATTTATCGGAGCGGAACTATGGTGGTTTGTCATTGTATCCTCAAAGAAGAGACATGACTAGCCATTCATCTGTCGAGGATTTGTCAGAAGGAGCAATAGTGCAACGCAAGGGCCGGTTTAAAGTAACTTCAGCAGATCTCAGTCCCAAGGGTCCAACATTAGGGTCACTAAATGCAGCTTCTGGGTTTAATCCAACAATCCTGAACCTGACAGCTGCTGCAGTTTTCCCGTCACTGCAAAGCAAGAATTCAGAGCCGGTTGAAATGGCCACCAGTAACCTTTCGCAGATATCTTCTTCATCTGCTCGAGAGAGAGTACTGAACTCTCAGCTCCTCCACCTACAACAAAGCCTTTATGAGGAATTAGAGAGACAAAAGTCAAAAAATGTCCAGTTAGAAAGAGAATTGAATGCTTTGGTTGCCAGCAAAGAGGAAAAACTATAA 1941 41.73 METVSEKRFPVNANDYKLYEEVGEGVSATVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIYHTNVLRAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATVLREVLKALVYLHAHGHIHRDVKAGNILVDFDGSVKLADFGVSACMFDAGDRLRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSLGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVALCLVKDPKKRPTSEKLLKHPFFKHGRPNDYIARTILEGLAPLGDRFKMLKAKEAELLVQNKALYENKDQLSQQEYIRGISAWNFNLEDLKNQAALIQDVNVAYAEDPDFGKMQQEKNDSSGFHVERSYIEKMKHLNPRPSQEDEFNELHDLSSSLASMPAKPLEALRHGYFCCFDICDDDIKSIIPRALDQENGSEDECSGQNSSSRHDMLEQKKYISDSLLPDRAISSKKVTNDGDRDNLQSKHLSERNYGGLSLYPQRRDMTSHSSVEDLSEGAIVQRKGRFKVTSADLSPKGPTLGSLNAASGFNPTILNLTAAAVFPSLQSKNSEPVEMATSNLSQISSSSARERVLNSQLLHLQQSLYEELERQKSKNVQLERELNALVASKEEKL 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3150781 3162314 + BLOR16122 Blo17g00301 72689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00301 646 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 643 - -
Blo17g00301 646 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 643 - -
Blo17g00301 646 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Blo17g00301 646 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Blo17g00301 646 Coils Coil 614 641 - -
Blo17g00301 646 MobiDBLite consensus disorder prediction 485 500 - -
Blo17g00301 646 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00301 646 SUPERFAMILY Protein kinase-like (PK-like) 13 307 IPR011009 -
Blo17g00301 646 MobiDBLite consensus disorder prediction 443 464 - -
Blo17g00301 646 CDD STKc_OSR1_SPAK 14 277 - -
Blo17g00301 646 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo17g00301 646 Gene3D Transferase(Phosphotransferase) domain 1 97 327 - -
Blo17g00301 646 MobiDBLite consensus disorder prediction 482 529 - -
Blo17g00301 646 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00301 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - qsu:112040585 900.968
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00301 Blo18g00333 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00301 Blo-Chr17:3150781 Blo04g00955 Blo-Chr4:11630212 4.32E-42 dispersed
Blo01g00457 Blo-Chr1:5066223 Blo17g00301 Blo-Chr17:3150781 5.28E-56 transposed
Blo02g00957 Blo-Chr2:37047802 Blo17g00301 Blo-Chr17:3150781 1.89E-178 transposed
Blo03g00674 Blo-Chr3:28389936 Blo17g00301 Blo-Chr17:3150781 2.15E-64 transposed
Blo05g00167 Blo-Chr5:1503595 Blo17g00301 Blo-Chr17:3150781 0 transposed
Blo07g00676 Blo-Chr7:22056791 Blo17g00301 Blo-Chr17:3150781 0 transposed
Blo17g00301 Blo-Chr17:3150781 Blo18g00333 Blo-Chr18:3452538 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00674 . 41 705 MAP Kinase Kinase Kinase Kinase AT1G53165 61.3 1.6e-205 713.0
Blo01g00457 . 257 526 MAP Kinase Kinase Kinase Kinase AT1G53165 51.7 6.8e-68 255.8
Blo03g00674 . 41 704 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 2.0e-224 775.8
Blo01g00457 . 257 526 MAP Kinase Kinase Kinase Kinase AT3G15220 50.6 9.8e-67 251.9
Blo01g00457 . 9 853 MAP Kinase Kinase Kinase Kinase AT1G69220 57.5 2.5e-239 825.5
Blo03g00674 . 42 275 MAP Kinase Kinase Kinase Kinase AT1G69220 52.3 1.2e-63 241.9
Blo17g00301 BCT 1 639 MAP Kinase Kinase Kinase Kinase AT5G14720 62.4 2.9e-228 788.5
Blo07g00676 CCT 3 392 MAP Kinase Kinase Kinase Kinase AT5G14720 61.5 5.3e-142 501.9
Blo02g00957 . 3 354 MAP Kinase Kinase Kinase Kinase AT5G14720 68.3 3.5e-141 499.2
Blo02g00957 . 5 488 MAP Kinase Kinase Kinase Kinase AT4G24100 66.9 1.7e-178 623.2
Blo17g00301 BCT 6 353 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.5e-134 477.2
Blo18g00333 BCT 6 317 MAP Kinase Kinase Kinase Kinase AT4G24100 57.1 1.3e-109 394.4
Blo02g00956 . 224 412 MAP Kinase Kinase Kinase Kinase AT4G24100 62.6 1.6e-51 201.4
Blo02g00957 . 6 474 MAP Kinase Kinase Kinase Kinase AT4G10730 68.9 5.4e-182 634.8
Blo05g00167 CCT 4 587 MAP Kinase Kinase Kinase Kinase AT4G10730 50.1 1.2e-144 510.8
Blo17g00301 BCT 7 376 MAP Kinase Kinase Kinase Kinase AT4G10730 63.8 1.4e-137 487.3
Blo18g00333 BCT 7 335 MAP Kinase Kinase Kinase Kinase AT4G10730 56.6 5.9e-112 402.1
Blo02g00956 . 207 412 MAP Kinase Kinase Kinase Kinase AT4G10730 55.7 1.2e-48 191.8
Blo17g00301 BCT 5 351 MAP Kinase Kinase Kinase Kinase AT1G70430 71.2 1.6e-145 513.5
Blo05g00167 CCT 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.3 6.6e-128 454.9
Blo18g00333 BCT 1 411 MAP Kinase Kinase Kinase Kinase AT1G70430 53.3 1.8e-120 430.3
Blo02g00957 . 6 371 MAP Kinase Kinase Kinase Kinase AT1G70430 56.6 3.7e-118 422.5
Blo05g00167 CCT 1 594 MAP Kinase Kinase Kinase Kinase AT1G79640 61.2 6.7e-206 714.1
Blo07g00676 CCT 1 682 MAP Kinase Kinase Kinase Kinase AT1G79640 54.6 1.0e-193 673.7
Blo17g00301 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT1G79640 68.1 1.4e-147 520.4
Blo02g00957 . 5 354 MAP Kinase Kinase Kinase Kinase AT1G79640 64.3 1.6e-135 480.3
Blo18g00333 BCT 6 317 MAP Kinase Kinase Kinase Kinase AT1G79640 60.3 1.1e-120 431.0
Blo17g00301 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 56.8 3.1e-99 359.4
Blo05g00167 CCT 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.7 2.3e-86 316.6
Blo02g00957 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 7.3e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84788 PF00069 Pkinase 4.30E-58 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00301 Blo_Chr17 FPKM 1.297167 1.184248 2.705713 2.423535 10.353105 10.267979 9.593016 3.008003 1.86108 2.512608