Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00302 ATGGGGCTGACCTTCACAAAACTCTTCAGCAGGCTCTTTGCTAAGAAAGAGATGCGCATTTTGATGGTTGGTCTTGACGCTGCTGGTAAGACTACAATTTTGTACAAGCTCAAGCTTGGGGAAATTGTTACAACCATTCCAACCATCGGATTCAATGTGGAGACTGTGGAATATAAAAACATCAGCTTCACTGTTTGGGATGTCGGAGGCCAGGATAAGATCCGTCCACTTTGGAGACACTACTTTCAGAATACACAGGGTCTTATTTTTGTTGTTGATAGCAATGACAGGGATAGAGTCGTTGAGGCAAGGGATGAGTTGCATAGGATGTTGAATGAGGTATATCATTATTTTTTTTCCATAACATCAGGCCTGTTTATCTGGTTTCAGGATGAACTAAGAGATGCGGTTTTGCTTGTATTTGCCAACAAGCAAGATCTTCCAAATGCAATGAATGCTGCAGAAATTACTGACAAGCTTGGTCTTCATTCTCTCCGCCAACGCCATTGGTACATCCAGAGCACGTGTGCAACATCTGGAGAGGGTCTGTACGAGGGTTTGGACTGGCTTTCAAACAACATTGCTAGCAAGGTATGGGCACAA 603 43.45 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEVYHYFFSITSGLFIWFQDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKVWAQ 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3167608 3172009 - BLOR16123 Blo17g00302 72690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00302 201 Pfam ADP-ribosylation factor family 130 194 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 Pfam ADP-ribosylation factor family 5 113 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 113 - -
Blo17g00302 201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 196 IPR027417 -
Blo17g00302 201 ProSiteProfiles small GTPase Arf family profile. 11 194 - -
Blo17g00302 201 PANTHER ADP RIBOSYLATION FACTOR-RELATED 130 197 IPR024156 GO:0005525
Blo17g00302 201 SMART sar_sub_1 1 194 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 Gene3D - 4 200 IPR027417 -
Blo17g00302 201 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 PRINTS GTP-binding SAR1 protein signature 168 192 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Blo17g00302 201 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 113 IPR024156 GO:0005525
Blo17g00302 201 PANTHER ADP-RIBOSYLATION FACTOR A1F 130 197 - -
Blo17g00302 201 SMART arf_sub_2 1 198 - -
Blo17g00302 201 CDD Arf1_5_like 18 193 IPR045872 GO:0003924
Blo17g00302 201 TIGRFAM small_GTP: small GTP-binding protein domain 16 117 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00302 K07937 ARF1_2; ADP-ribosylation factor 1/2 - ncol:116255080 355.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo17g00302 Blo18g00332 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00243 Blo-Chr5:2727597 Blo17g00302 Blo-Chr17:3167608 1.96E-41 dispersed
Blo10g00088 Blo-Chr10:868151 Blo17g00302 Blo-Chr17:3167608 3.15E-127 dispersed
Blo12g00050 Blo-Chr12:3553770 Blo17g00302 Blo-Chr17:3167608 2.79E-48 dispersed
Blo16g00938 Blo-Chr16:37486919 Blo17g00302 Blo-Chr17:3167608 1.54E-15 dispersed
Blo17g00302 Blo-Chr17:3167608 Blo18g00332 Blo-Chr18:3444862 1.04E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
Vvi14g1341 . . Bda01g01281 Bda13g01621 Bpe02g01496 Bpe14g00245 . . Cmo14g00674 Cmo11g01684 Cma11g01436 Cma14g00659 . . . . . Bhi06g00533 . . . Hepe02g1810 . . Cla10g01344 Cam10g1267 Cec10g1423 Cco10g1399 Clacu10g1400 Cmu10g2171 Cre10g1555 . . . . Lsi02g01575 Csa05g02332 Chy04g01450 Cme04g01875 Blo17g00302 Blo18g00332 . . . . Bma01g00973 Bma02g00360 . Cmo04g02828 Cmo15g00357 Cma04g02699 Cma15g00349 . . . . Bhi11g03096 . . . . . . Cla09g01865 . . . . . . . Csa03g03948 Chy09g00345 Cme09g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00302 Blo_Chr17 FPKM 4.874942 5.478482 6.751645 7.226876 8.050117 7.924098 8.152702 7.70372 6.674526 6.99684