Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00327 ATGATGGAGGAGACGATGACAATCGACTACGCGATGGAGGCAGCCTCTGGACCACACTTTTCCGGCCTCAGATTGGACGGTCTTCGCTCATCGTCGGCCCCTTCTTCGTCCCCTTCTTCTGCTACTCATCGCTCTTCTTCGGCTACTTCCTTTTCCCCGTCAGACTCCAATGCTTTCAGGCAGCCATTCGTCATCGGAGTTTCGGGGGGTACGGCTTCGGGTAAGACCACGATCTGTGACATGATAATCCAGCAGCTTCATGATCACAGGGTTGTACTTGTCAATCAGGATTCTTTTTATCGTGGTTTGACACCCGAGGAATCCCAGTGTGTGCAGGAATACAACTTTGATCATCCTGATGCTTTTGACACCGATCAGCTTTTGGATTGCATTCAAAAGTTAAAGAGTGGGCAATCTTACCATGTTCCAATATACGATTTCAAAAAACATCGCCGCTCTTCGGATAGCTTTCGGCAGGTAAATGCATCTGATGTTATTATTTTGGAAGGAATTCTTGTTTTCCATGATCAACGTGTACGAGATCTAATGAATATGAAGATTTTTGTAGACACAGATGCTGATGTGAGGCTTGCACGTAGAATTAGACGCGATACTGTGGAGCGGGGAAGGGACATCGACTCTGTTCTTGAACAGAGAAGGCTTACACTGCATTTGGGATCAGAGCTTGACATGGCCAAGCCGACGAGGAGTGATCGGATGAAAGAGCTCGAAGGGTATGTTGCTGGAATGAGAGTGAAGAAAGGATATCTCGATCGTTTTGGCGATGAGATAGACATCAGGAGGACGACAGTTGGGATCTGCCGTTTGAGCGTTGACCATCGGATAGCAGTTCTCCTCCTCATTAGGGCAATTGGTATAGCCCTGTCGCTTTTCGCAAATGAGCCGGGTGGAGTAGTTCTCCTTTGGGTGGAGATGATAGTGTTCGATAGGGATGGAAGGGATGCGTGA 969 47.88 MMEETMTIDYAMEAASGPHFSGLRLDGLRSSSAPSSSPSSATHRSSSATSFSPSDSNAFRQPFVIGVSGGTASGKTTICDMIIQQLHDHRVVLVNQDSFYRGLTPEESQCVQEYNFDHPDAFDTDQLLDCIQKLKSGQSYHVPIYDFKKHRRSSDSFRQVNASDVIILEGILVFHDQRVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDIDSVLEQRRLTLHLGSELDMAKPTRSDRMKELEGYVAGMRVKKGYLDRFGDEIDIRRTTVGICRLSVDHRIAVLLLIRAIGIALSLFANEPGGVVLLWVEMIVFDRDGRDA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3420134 3424070 + BLOR16148 Blo17g00327 72715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00327 322 PANTHER URIDINE KINASE 24 219 - -
Blo17g00327 322 PANTHER URIDINE KINASE 24 219 - -
Blo17g00327 322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 218 IPR027417 -
Blo17g00327 322 CDD UMPK 64 222 IPR000764 -
Blo17g00327 322 MobiDBLite consensus disorder prediction 28 55 - -
Blo17g00327 322 Gene3D - 60 240 IPR027417 -
Blo17g00327 322 PRINTS Uridine kinase signature 62 79 - -
Blo17g00327 322 PRINTS Uridine kinase signature 208 219 - -
Blo17g00327 322 PRINTS Uridine kinase signature 92 103 - -
Blo17g00327 322 PRINTS Uridine kinase signature 194 204 - -
Blo17g00327 322 PRINTS Uridine kinase signature 137 152 - -
Blo17g00327 322 MobiDBLite consensus disorder prediction 23 55 - -
Blo17g00327 322 Pfam Phosphoribulokinase / Uridine kinase family 64 218 IPR006083 GO:0005524|GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00327 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - jre:108992088 337.035
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00891 Blo-Chr3:34844958 Blo17g00327 Blo-Chr17:3420134 5.77E-10 dispersed
Blo11g00813 Blo-Chr11:13377004 Blo17g00327 Blo-Chr17:3420134 8.00E-15 dispersed
Blo17g00327 Blo-Chr17:3420134 Blo19g00249 Blo-Chr19:13754819 2.26E-10 dispersed
Blo17g00327 Blo-Chr17:3420134 Blo03g00493 Blo-Chr3:17772975 1.38E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1191 . . . Bda13g01653 . Bpe14g00215 . . . . Cma11g01493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00327 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo02g00658 . 70 526 PRT Gene Family AT2G16570 81.7 1.9e-217 752.3
Blo02g00660 . 1 395 PRT Gene Family AT2G16570 84.8 2.7e-195 678.7
Blo02g00658 . 71 522 PRT Gene Family AT4G34740 83.4 1.0e-218 756.5
Blo02g00660 . 1 395 PRT Gene Family AT4G34740 85.3 1.4e-196 682.9
Blo02g00658 . 70 520 PRT Gene Family AT4G38880 72.4 2.1e-186 649.0
Blo02g00660 . 1 368 PRT Gene Family AT4G38880 74.3 8.7e-156 547.4
Blo17g00861 . 4 203 PRT Gene Family AT1G27450 70.5 4.2e-73 271.2
Blo17g00017 . 380 552 PRT Gene Family AT1G27450 69.9 4.0e-68 254.6
Blo02g01051 . 8 248 PRT Gene Family AT1G27450 53.9 2.5e-62 235.3
Blo03g00170 . 1 136 PRT Gene Family AT1G27450 77.9 2.5e-57 218.8
Blo18g00019 . 80 213 PRT Gene Family AT1G27450 69.4 6.1e-48 187.6
Blo17g00017 . 402 557 PRT Gene Family AT1G80050 73.7 1.1e-64 243.0
Blo03g00170 . 1 136 PRT Gene Family AT1G80050 77.2 8.2e-57 216.9
Blo02g01051 . 30 248 PRT Gene Family AT1G80050 51.6 2.1e-52 202.2
Blo18g00019 . 80 220 PRT Gene Family AT1G80050 70.2 2.7e-52 201.8
Blo17g00861 . 27 200 PRT Gene Family AT1G80050 60.9 2.7e-52 201.8
Blo17g00017 . 370 517 PRT Gene Family AT5G11160 83.8 5.3e-67 250.8
Blo17g00861 . 5 166 PRT Gene Family AT5G11160 58.6 2.1e-47 185.7
Blo03g00170 . 1 117 PRT Gene Family AT5G11160 76.1 5.2e-46 181.0
Blo18g00019 . 80 193 PRT Gene Family AT5G11160 75.4 4.1e-43 171.4
Blo18g00155 . 3 188 PRT Gene Family AT1G71750 61.9 6.5e-64 240.7
Blo03g01488 . 15 469 PRT Gene Family AT1G55810 82.9 3.9e-221 764.2
Blo03g00493 . 170 624 PRT Gene Family AT1G55810 83.6 8.6e-221 763.1
Blo17g00327 . 19 218 PRT Gene Family AT1G55810 59.2 2.2e-59 226.9
Blo17g00329 . 39 153 PRT Gene Family AT1G55810 84.3 1.8e-53 207.2
Blo03g00493 . 221 628 PRT Gene Family AT3G27440 76.0 2.5e-182 635.2
Blo03g01488 . 66 473 PRT Gene Family AT3G27440 73.8 2.0e-179 625.5
Blo17g00329 . 39 153 PRT Gene Family AT3G27440 77.4 3.3e-49 193.0
Blo17g00327 . 81 218 PRT Gene Family AT3G27440 70.3 2.8e-48 189.9
Blo03g01488 . 3 468 PRT Gene Family AT3G27190 74.9 1.3e-206 716.1
Blo03g00493 . 157 623 PRT Gene Family AT3G27190 73.7 1.6e-204 709.1
Blo17g00327 . 1 218 PRT Gene Family AT3G27190 77.2 1.4e-88 323.9
Blo17g00329 . 34 153 PRT Gene Family AT3G27190 84.2 9.3e-56 214.9
Blo07g01168 . 48 286 PRT Gene Family AT3G53900 75.0 1.6e-103 372.9
Blo03g00493 . 155 624 PRT Gene Family AT4G26510 83.9 1.9e-231 798.5
Blo03g01488 . 1 469 PRT Gene Family AT4G26510 83.1 3.1e-229 791.2
Blo17g00327 . 12 218 PRT Gene Family AT4G26510 63.3 1.6e-65 247.3
Blo17g00329 . 39 153 PRT Gene Family AT4G26510 86.1 6.5e-54 208.8
Blo03g01488 . 11 471 PRT Gene Family AT5G40870 74.8 1.9e-205 712.2
Blo03g00493 . 157 626 PRT Gene Family AT5G40870 73.0 2.7e-204 708.4
Blo17g00327 . 1 218 PRT Gene Family AT5G40870 78.4 6.2e-92 335.1
Blo17g00329 . 39 153 PRT Gene Family AT5G40870 87.0 1.6e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00327 Blo_Chr17 FPKM 30.993759 35.493515 18.780237 18.397511 31.205585 28.899708 29.806 13.946936 12.686418 13.142293