Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00352 ATGGCTGGAGCAGTTCATCTCAGCTCAATCTTTCTAGTTTCATTGGCTTTGTTAGTCCCCGCCCTTCATGCGGACATCGCCGAGTTCGATGACTACTGGCTTCATCGAGCCCAGGAAGCTGAGAAGGCGGCTCTCGAGGCCTATCAGCCCGATCCCTTCAACGTCACCAACCAATTCAATATTCATGTTCACAGGGTTGTGGCAGCTAGAGTGGGGACTAACAGCACGAGGCGGAACCTGAGAGGATCAAACAAAAACAAAGGGCGATGTGTGGCCACAAATCCAATAGATCGATGCTGGCGGTGCGACAGGAACTGGGCTAGGAATCGTAAGCGGCTAGCTAGGTGTGCGCTTGGCTTCGGGAGGAGGACGACTGGAGGACTCAAAGGTCGCATTTACGTCGTCACCGACCCATCAGACTGGAATGTCTTGAACCCTAAACCCGGAACCCTCCGTCATGCAGTGATCCAGAAGCAGCCACTCTGGATCATCTTCGCACGGAGCATGGTCATTAAACTCTCGCAGGAGCTCATAATCACGAGCCACAAGACTATCGACGCTCGAGGGGCGAAGGTTCACATAGCTTACGGGGCGGGATTGACTATCCAATTTGTGAGGAATGTTATAATTCATGGGCTTCGTATACATGACATAGTGTCAGCTTCAGGTGGGATGATAAGGGATTCTGTTGAACATTATGGGCTCAGAACAGCCAGTGATGGAGATGGGATTTCTATATTTGGAGCAACCGACGTTTGGCTGGACCATCTTTCCATGTCCAACTGCCAAGATGGATTGATCGACGCCATTCAAGGATCGACGGCCATCACTATCTCGAATTCTCACTTCACCGATCACAATGATGTGATGCTGTTCGGCGCCAGCGACGTCTACAGAGGGGACAAGATAATGCAAGTGACGGTGGCGTTCAACCATTTCGGGAAAGGGTTGGTGCAGAGAATGCCGAGATGTAGGTGGGGATTCGTCCACGTCGTCAACAATGACTATACCCACTGGCTAATGTACGCCATTGGAGGAAGCTCCGAACCCACCATTATCAGCCAAGGCAACCGCTTCATCGCTCCCCACAACCAGGCCGCAAAAGAGGTGACCAAGAGAGACTACGCCCCGAAAAGCGTCTGGCAGAACTGGACCTGGCGGTCGCAGGGCGACCTTATGAAGAACGGAGCTTTCTTCGTCCAATCTGGAAGGCCTTTGACGGTAAAGGCATTTAGCAGGCACGATATGATCAAGGCCAAGCCTGGGAATTTTGTTGCGAGGCTCACTCGCTTCTCTGGCTCGCTCAGCTGCCGGGTGGGTCGGCCATGCTAG 1332 52.63 MAGAVHLSSIFLVSLALLVPALHADIAEFDDYWLHRAQEAEKAALEAYQPDPFNVTNQFNIHVHRVVAARVGTNSTRRNLRGSNKNKGRCVATNPIDRCWRCDRNWARNRKRLARCALGFGRRTTGGLKGRIYVVTDPSDWNVLNPKPGTLRHAVIQKQPLWIIFARSMVIKLSQELIITSHKTIDARGAKVHIAYGAGLTIQFVRNVIIHGLRIHDIVSASGGMIRDSVEHYGLRTASDGDGISIFGATDVWLDHLSMSNCQDGLIDAIQGSTAITISNSHFTDHNDVMLFGASDVYRGDKIMQVTVAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSSEPTIISQGNRFIAPHNQAAKEVTKRDYAPKSVWQNWTWRSQGDLMKNGAFFVQSGRPLTVKAFSRHDMIKAKPGNFVARLTRFSGSLSCRVGRPC 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3723371 3724942 + BLOR16173 Blo17g00352 72740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Blo17g00352 443 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Blo17g00352 443 Pfam Pectate lyase, N terminus 26 80 IPR007524 GO:0030570
Blo17g00352 443 PANTHER PECTATE LYASE 18-RELATED 7 443 IPR045032 GO:0030570
Blo17g00352 443 SMART amb_all 168 365 IPR002022 -
Blo17g00352 443 Gene3D - 93 436 IPR012334 -
Blo17g00352 443 PANTHER PECTATE LYASE 7 443 - -
Blo17g00352 443 SUPERFAMILY Pectin lyase-like 94 433 IPR011050 -
Blo17g00352 443 Pfam Pectate lyase 188 359 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00418 Blo-Chr1:4714030 Blo17g00352 Blo-Chr17:3723371 0 dispersed
Blo17g00352 Blo-Chr17:3723371 Blo16g00243 Blo-Chr16:5643367 2.52E-164 dispersed
Blo17g00352 Blo-Chr17:3723371 Blo16g01131 Blo-Chr16:39837804 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00352 K01728 - qsu:112023367 696.427