Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00363 ATGGAAGTAGCTCCGCCTCCGATTGCCGCCATTAGTAGCGGTACTAAATCTCCTGAAGCTGATTCTGAAACCCCGACGAAGATCCAACAGACCGGAAAGCTCTCCCCTTTCAGTAATGGCGTCCTCAAGCGTCACAGTTATGCGGCTTCTCAGCCTGTAATAGTTTCTTCTGTTTCTTACAAAGAATGTCTGAAAAATCACGCTGCTAGCATCGGTTCTCACGCTTTGGATGGGTGTGGAGAGTTTATGCCCTCTCCTTCCGCCGCTTCAAATGACCCTTTTTCTCTCAAATGCGCCGCCTGCGGTTGTCACCGGAACTTCCACCGCCGTGAGCCGGAAGATCAGCCACTTTCCGCTGCCATTTCCACACATGTCATCGAATATCAGCCTCACCACCGCCATCACCCGCCTCCTCCTCTACACCCGCCCTCCAACCGCAGCCCGAATTCTTCCTCGCCACCTCCAATCTCCTCCTCTTACTACCCCTCAGCCCCCCACATGCTTCTCGCTCTGTCGGCCGGACTGTCAGCTCCTCCCGAAAATGCGCCTGCAATTGTCTCTCCGACCACCGCGAGAAAAAGATTCAGAACAAAATTCAGCCTAGATCAGAAAGAGAAGATGCACGAGTTTGCAGAAAAACTGGGGTGGAAATTTCAGAAGAGAGACGAAGAACTTGTTCGAGAATTCTGCAGTGAAGTCAGAGTAGAAAAAGGAGTTCTCAAAGTCTGGATGCATAACAACAAGAACACTCTTGCTAAGAAGGACGTCAATGGCGAAAAGCCCATCCAGCAAAATTCCCAGAACAACGGCAACGACAACTACGAGGAAAACGCCATTAATCAGCACCACTCCATGGTTCAGAATCCGAATCACTATCACAACGATGTAAGGCTACATTTTGGCACTAATGGGTCGTCTTCTTCCTCTTGA 930 50.22 MEVAPPPIAAISSGTKSPEADSETPTKIQQTGKLSPFSNGVLKRHSYAASQPVIVSSVSYKECLKNHAASIGSHALDGCGEFMPSPSAASNDPFSLKCAACGCHRNFHRREPEDQPLSAAISTHVIEYQPHHRHHPPPPLHPPSNRSPNSSSPPPISSSYYPSAPHMLLALSAGLSAPPENAPAIVSPTTARKRFRTKFSLDQKEKMHEFAEKLGWKFQKRDEELVREFCSEVRVEKGVLKVWMHNNKNTLAKKDVNGEKPIQQNSQNNGNDNYEENAINQHHSMVQNPNHYHNDVRLHFGTNGSSSSS 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 3880322 3881251 - BLOR16184 Blo17g00363 72751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00363 309 MobiDBLite consensus disorder prediction 1 35 - -
Blo17g00363 309 MobiDBLite consensus disorder prediction 15 35 - -
Blo17g00363 309 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 10 271 - -
Blo17g00363 309 Gene3D - 183 254 - -
Blo17g00363 309 MobiDBLite consensus disorder prediction 259 275 - -
Blo17g00363 309 MobiDBLite consensus disorder prediction 129 159 - -
Blo17g00363 309 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 192 249 IPR006455 -
Blo17g00363 309 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 10 271 - -
Blo17g00363 309 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 60 111 IPR006456 -
Blo17g00363 309 MobiDBLite consensus disorder prediction 255 275 - -
Blo17g00363 309 Pfam ZF-HD protein dimerisation region 58 112 IPR006456 -
Blo17g00363 309 SUPERFAMILY Homeodomain-like 185 253 IPR009057 -
Blo17g00363 309 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 60 111 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00363 - - - jre:108985975 332.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo10g00133 Blo-Chr10:1513887 Blo17g00363 Blo-Chr17:3880322 7.07E-95 dispersed
Blo17g00363 Blo-Chr17:3880322 Blo18g00811 Blo-Chr18:23935729 1.66E-42 dispersed
Blo11g00585 Blo-Chr11:5715242 Blo17g00363 Blo-Chr17:3880322 6.41E-93 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo03g00280 . 66 279 ZF-HD Transcription Factor Family AT2G02540 51.4 6.9e-52 201.4
Blo04g00916 BCT 121 309 ZF-HD Transcription Factor Family AT2G02540 50.2 4.8e-37 152.1
Blo18g00811 BCT 92 285 ZF-HD Transcription Factor Family AT4G24660 50.5 4.3e-43 171.8
Blo17g00796 BCT 91 285 ZF-HD Transcription Factor Family AT4G24660 50.3 2.2e-42 169.5
Blo06g00064 . 40 216 ZF-HD Transcription Factor Family AT4G24660 50.8 2.9e-39 159.1
Blo10g00133 BCT 15 261 ZF-HD Transcription Factor Family AT5G39760 52.3 4.3e-52 202.2
Blo17g00363 . 24 271 ZF-HD Transcription Factor Family AT5G39760 54.6 2.2e-48 189.9
Blo05g00749 . 111 289 ZF-HD Transcription Factor Family AT5G65410 51.1 9.3e-40 161.0
Blo11g00585 BCT 58 247 ZF-HD Transcription Factor Family AT1G69600 52.5 2.1e-48 189.5
Blo10g00133 BCT 12 252 ZF-HD Transcription Factor Family AT5G15210 58.8 7.1e-53 204.5
Blo17g00363 . 11 248 ZF-HD Transcription Factor Family AT5G15210 56.3 8.1e-49 191.0
Blo04g00916 BCT 112 309 ZF-HD Transcription Factor Family AT1G75240 53.8 3.3e-38 156.0
Blo10g00133 BCT 1 261 ZF-HD Transcription Factor Family AT3G28920 57.3 9.9e-59 224.2
Blo17g00363 . 16 279 ZF-HD Transcription Factor Family AT3G28920 56.3 3.0e-55 212.6
Blo11g00585 BCT 9 247 ZF-HD Transcription Factor Family AT3G28920 52.8 5.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13514 PF04770 ZF-HD_dimer 1.60E-28 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00363 Blo_Chr17 FPKM 16.497797 15.794264 19.303738 18.471514 21.424229 19.659374 21.922115 21.096916 19.789423 22.360062