Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00374 ATGGAGGGACTGGGAAGGTCGCCGCCGGTAGGGGCGGCTGTTTCGGTGGTGGTGACGGTGTGTTTTTTAGGGATGATGGTGCAAGAAGTTTCAGCCACTCGGTGGATTGTTGGAAGTGGCATGGGGTGGACAGCCGATGTCAACTACACTGTTTGGGCACAGGATAAGCACTTCTACAATGGCGACTGGCTCTTTTTTGTTTACGACCGGAATCAAAAGAACGTGTTGGAGGTGAACCAAACGGACTTCGAGGCCTGCAACTCCGATCACCCGCTTCATAATTGGACGACGGGGGCCGGGAGAGACGTGGTGCCGCTCAACGTCACAAGGCCCTACTATTTCATCAGCGGCAAAGGCTTCTGCTATGGAGGTATGAAGTTGGGCATCCAGGTGGAGAATTTGCCTCCTCCTCCATCGTCTCCGCCGGTAGATCAAAAGAGTTCAGCTCCTCCAGCTCGAACTGGCGTTAGCGGTCGAAGTCATATGGAAAGCCATTGTTTGGCTATGGTAGTGGTGTTTCTTGTACTTCAGATTTGCTCAATCAAACTGTAG 552 52.54 MEGLGRSPPVGAAVSVVVTVCFLGMMVQEVSATRWIVGSGMGWTADVNYTVWAQDKHFYNGDWLFFVYDRNQKNVLEVNQTDFEACNSDHPLHNWTTGAGRDVVPLNVTRPYYFISGKGFCYGGMKLGIQVENLPPPPSSPPVDQKSSAPPARTGVSGRSHMESHCLAMVVVFLVLQICSIKL 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4139278 4140357 - BLOR16195 Blo17g00374 72762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00374 183 Pfam Plastocyanin-like domain 43 125 IPR003245 GO:0009055
Blo17g00374 183 SUPERFAMILY Cupredoxins 32 131 IPR008972 -
Blo17g00374 183 MobiDBLite consensus disorder prediction 133 157 - -
Blo17g00374 183 PANTHER LAMIN-LIKE PROTEIN 11 144 - -
Blo17g00374 183 PANTHER BLUE COPPER PROTEIN 11 144 IPR039391 GO:0009055
Blo17g00374 183 ProSiteProfiles Phytocyanin domain profile. 33 133 IPR003245 GO:0009055
Blo17g00374 183 Gene3D - 31 134 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00374 - - - pdul:117623184 228.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo17g00374 Blo-Chr17:4139278 Blo07g00213 Blo-Chr7:2706591 8.81E-15 dispersed
Blo17g00374 Blo-Chr17:4139278 Blo17g00375 Blo-Chr17:4171405 1.11E-87 tandem
Blo17g00374 Blo-Chr17:4139278 Blo18g00400 Blo-Chr18:4282481 3.78E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1592 . . . Bda13g01701 . Bpe14g00163 . . Cmo14g00570 Cmo11g01202 . . Car11g00977 . . Cpe03g00492 . . . . . . . . Cla10g01478 Cam10g1523 Cec10g1561 Cco10g1539 Clacu10g1536 Cmu10g2300 Cre10g1683 . . . . . . . . Blo17g00374 . . . . . Bma01g01054 Bma02g00433 . . . . . . . Cpe04g00183 . . . . . . . . . . . . . . . . Csa03g03792 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo03g00677 . 340 474 Phytocyanin Superfamily AT4G27520 51.9 1.8e-37 153.7
Blo15g00571 . 314 440 Phytocyanin Superfamily AT4G32490 57.3 5.8e-37 151.4
Blo18g00400 BCT 26 176 Phytocyanin Superfamily AT5G15350 53.9 1.1e-46 183.3
Blo17g00374 . 30 136 Phytocyanin Superfamily AT5G15350 61.7 9.7e-40 160.2
Blo17g00375 BCT 30 135 Phytocyanin Superfamily AT5G15350 60.4 2.2e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo17g00374 Blo_Chr17 FPKM 1.057315 0.810657 1.112485 1.340322 0.0 0.0 0.658053 0.527252 0.0 0.651925