Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00396 ATGGGGAGAAGAAGAGTAGAACTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTACGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCACTTATTATCTTCTCGAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAACATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGTGCGGTGGAAGTCAACAGACCTTGCAAGGAACTTGAGCAGAGCAGCTACAGAGAGTATTTGAAGTTGAAATCCAGATTTGAGTCCCTACAAAGGACTCAAAGAAATCTGCTTGGGGAAGAATTAGGTCCCTTGAACTCAAAAGAGCTTGAACAGCTTGAGCGTCAGCTGGAAGCATCCTTAAAGCAAGTCAGATCCACCAAGGAACAAATGCTGATCGAAGCCAACAGAGCTTTGTCTATAAAACTAGATGAAATCAGTTCAAGAAATCAGCTAAGGCCAGTTTGGGAAGGTGGGGATCAAAATATATCATTTGGATCTCAAAGTGCCCAAACTCAAGGATTCTTCCAGCCTGTGGACTGCAATCCCACTTTGCAAATGGGATACAGTGCTGCTGACGAGATGGTTGCAACTGGCGCAGCTCATGGCCAACAAATCACTGGATTTATACCTGGATGGATGATCTGA 693 44.01 MGRRRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQRTQRNLLGEELGPLNSKELEQLERQLEASLKQVRSTKEQMLIEANRALSIKLDEISSRNQLRPVWEGGDQNISFGSQSAQTQGFFQPVDCNPTLQMGYSAADEMVATGAAHGQQITGFIPGWMI 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 4438325 4450432 + BLOR16217 Blo17g00396 72784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00396 230 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Blo17g00396 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 212 - -
Blo17g00396 230 Pfam K-box region 88 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo17g00396 230 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Blo17g00396 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo17g00396 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo17g00396 230 ProSiteProfiles K-box domain profile. 88 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo17g00396 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo17g00396 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo17g00396 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo17g00396 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo17g00396 230 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Blo17g00396 230 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 212 - -
Blo17g00396 230 Coils Coil 122 145 - -
Blo17g00396 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo11g00324 Blo17g00396 CCT
Blo11g00324 Blo17g00396 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00140 Blo-Chr1:1906764 Blo17g00396 Blo-Chr17:4438325 3.05E-65 transposed
Blo11g00324 Blo-Chr11:2653451 Blo17g00396 Blo-Chr17:4438325 3.99E-121 wgd
Blo17g00396 Blo-Chr17:4438325 Blo18g00414 Blo-Chr18:4509735 1.31E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13516 PF01486 K-box 1.70E-19 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00396 K09264 - jre:108988112 369.777