Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00470 ATGCGAAGAGGCGATGAGGATGAAGAATTCAGAGGGGGAGAAATCTGTATTCTAATTGATCGCACGAGTTCTTCTTCATTTATTCCTCGATTTGAAAAACGAAAAACGGAGAAAGTGATGAACGGGAGAGGAGGAGGAGAGAATGCGAAGGAGATGGTGAATTCAGAGGCGGAGGAGAGAGAGTACGAAGTGGAGGAAGTGAGAGAGAGGATAAATTCTTCGAGAGGAAGTCGATTAAATCTGATAGAGAGCGAGTTGAGGATGGAGTCGACGCAGAGAAAGTTTTGCCGTGAGAGCTTCATCAATGGCATCAACGATCTCTGCAACGGCCTCGTTATCCACCCTGAAAACAGGTTGTACATGGCGTGGACCAACTTCATATTGATATGGGCAGTTTACTCGTCGTTCTTTACACCAATGGAGTTCGGATTTTTCAGGGGACTGCCTGAGAATCTCTTCATTCTTGACATTGCAGGACAAGTTGTCTTTTTGCTCGACATCGCACTTCAGTTTTTTCTTGCTTACAGAGACAGTCAGACCTATAGAATTGTTCATAAACGTACTCCTATTGCTCTACGGTATTTGAAATCCGGTTTTGCGATTGACTTTATTGGATGCATGCCTTGGGACATCATTTACAAGGTTTGTGGCAGAAGAGAGGAAGTGAGGTATCTTTTGTGGATCAGATTAAGTAGGGTGCGAAAAGTCACTGATTTCTTTCACAATATGGAGAAGGATATACGTATTAACTACATGTTCACTAGGATTGGAAAGCTCATTGTTGTTGAGCTCTATTGGACGCATACAGCGGCTTGCATCTTTTACTATTTGGCTACAACTCTTCCTCCTTCAGAAGAAGGGTACACATGGATTGGAAGCTTAAAGTTGGGAGTTTATAGTTACTCCAACTTCAGAGATATCGATCTATGGAAACGCTACACAACATCCTTATATTTTGCCATAGTAACTATGGCCACTGTTGGTTATGGAGATATACATGCAGTTAATATGAGGGAAATGATATTTATAATGATATATGTCTCTTTTGACATGATTCTTGGTGCTTATTTGATCGGTAACATGACAGCCTTAATTGTTAAAGGCTCAAAGACTGAAAAGTTCAGAGATAAAATGACAGATCTCATCAAATACATGAATAGAAATAGGCTTGGAAAAGACATCCGTAATCAGATCAAAGGTCATCTACGTTTGCAGTATGAAAGTAGTTACACTGAAGCTGCTGTTCTTCAGGACATCCCCATTTCTATCCGTGCCAAGATTTCACAAACTTTATACTTGCCATACATTGAGAATGTCTCTCTTTTCAAGGGATGCTCATTTGAGTTCATCAATCAAATATCTATAAGACTACATGAAGAGTTTTTTCTCCCTGGAGAAGTGATAATGGAACAGGGAAATGTCGTAGATCAACTATATTTTATCTGTCATGGCCAAATGGCTTTGTTCTCTTTTATTGATCCAGTGCAAGTGATCTTGTGTAATCTTATAAGTTATACACTGTCCTCTCTTGAGGAACTGGGCATAGGAGAACATGGATCAGAAGAAGCTGTTTCAGTCCTAAAACCCAACAACTTATTTGGAGAGATTTCTATTCTTTGCAATATTCCTCAACCATATACAGTTCGTGTTAGTGAATTATGTCGTCTTCTGAGGCTTGACAAGCAGTCATTTACAAATATTCTTGATATCTACTTTTATGATGGAAGGAAAATCTTGAACAATCTTCTAGAGGGAAAAGAATCTAGTCTCCGAGTCAAGCAGTTGGAGTCAGATATCACATTTCATATTGGAAAGCAAGAAGCTGAACTTGCTTTAAAAGTGAATAGTGCAGCTTACCATGGAGATTTGCATCAGCTCAAAGGTTTGATCCGAGCAGGAGCTGATCCAAACAAGAAAGATTACGATGGGAGGTCGCCATTGCACCTTGCAGCATCAAGAGGATACGAGGATATCGCACTTTTTCTGATTCAGGAAGGAGTGGACACCAACATAAAAGATAAATTTGGAACAACTCCTTTACTAGAAGCCATAAAAAACGGGCATGATCGAGCAGCGGCTTTACTTGTGAAAGAAGGTGCCTTTTTAAAGATAGAGGACGCTGGGAGCTTTCTCTGTACAGCCATTGCAAGGGGGGATTCAGATTTTCTTAAAAGATTATTGGCCAATGGGATTGATCCAAACTCGAGGGATTATGATTATCGAACTCCACTTCATGTTGCTGCTTCTGGAGGACTATATCTGATGGCTAAGCAGCTGGTAGAAGCTGGGGCCAGTGTCCTTTCAAAAGACAGATGGGGAAACACCCCTCTGGACGAGTGCCGGACGTCTGGAAACAATAATCTGATCAAACTAATGGAAGAAGCAAAGGCCGTTCAGCTCTCTGCATTTCCTCATCAAACCCAAGAAGTCACTGGAAAAAAGCATCATAGAAAATGCACAGTTTTCCCTTTCCACCCTTGGGATCCTATCGAACATCGAAGATCTGGGATCGTCCTGTGGGTTCCGCAAACCATTAAAGAGCTTATCAAAGCTGCAATGGAGGGGCTACAACTTAAAAGCAGTACTTGTATACTAACGGAAGAAGGAGGTAAAATTCTTGATGTGGACATGATTAATGATGGTCAAAAGCTGTATCTAGGCAGTGAAACACATTAG 2676 40.96 MRRGDEDEEFRGGEICILIDRTSSSSFIPRFEKRKTEKVMNGRGGGENAKEMVNSEAEEREYEVEEVRERINSSRGSRLNLIESELRMESTQRKFCRESFINGINDLCNGLVIHPENRLYMAWTNFILIWAVYSSFFTPMEFGFFRGLPENLFILDIAGQVVFLLDIALQFFLAYRDSQTYRIVHKRTPIALRYLKSGFAIDFIGCMPWDIIYKVCGRREEVRYLLWIRLSRVRKVTDFFHNMEKDIRINYMFTRIGKLIVVELYWTHTAACIFYYLATTLPPSEEGYTWIGSLKLGVYSYSNFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHLRLQYESSYTEAAVLQDIPISIRAKISQTLYLPYIENVSLFKGCSFEFINQISIRLHEEFFLPGEVIMEQGNVVDQLYFICHGQMALFSFIDPVQVILCNLISYTLSSLEELGIGEHGSEEAVSVLKPNNLFGEISILCNIPQPYTVRVSELCRLLRLDKQSFTNILDIYFYDGRKILNNLLEGKESSLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKKDYDGRSPLHLAASRGYEDIALFLIQEGVDTNIKDKFGTTPLLEAIKNGHDRAAALLVKEGAFLKIEDAGSFLCTAIARGDSDFLKRLLANGIDPNSRDYDYRTPLHVAASGGLYLMAKQLVEAGASVLSKDRWGNTPLDECRTSGNNNLIKLMEEAKAVQLSAFPHQTQEVTGKKHHRKCTVFPFHPWDPIEHRRSGIVLWVPQTIKELIKAAMEGLQLKSSTCILTEEGGKILDVDMINDGQKLYLGSETH 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6596870 6603356 + BLOR08016 Blo17g00470 72858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00470 891 SUPERFAMILY Ankyrin repeat 615 794 IPR036770 -
Blo17g00470 891 ProSiteProfiles Ankyrin repeat profile. 739 771 IPR002110 GO:0005515
Blo17g00470 891 Gene3D - 707 802 IPR036770 -
Blo17g00470 891 ProSiteProfiles Ankyrin repeat region circular profile. 739 771 - -
Blo17g00470 891 Pfam KHA, dimerisation domain of potassium ion channel 817 886 IPR021789 -
Blo17g00470 891 Pfam Ankyrin repeats (3 copies) 713 792 IPR002110 GO:0005515
Blo17g00470 891 Pfam Ankyrin repeats (3 copies) 617 704 IPR002110 GO:0005515
Blo17g00470 891 PRINTS EAG/ELK/ERG potassium channel family signature 313 330 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo17g00470 891 PRINTS EAG/ELK/ERG potassium channel family signature 357 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo17g00470 891 PRINTS EAG/ELK/ERG potassium channel family signature 156 166 IPR003938 GO:0005249|GO:0006813|GO:0016020
Blo17g00470 891 ProSiteProfiles cAMP/cGMP binding motif profile. 441 585 IPR000595 -
Blo17g00470 891 SMART cnmp_10 441 583 IPR000595 -
Blo17g00470 891 SUPERFAMILY Voltage-gated potassium channels 115 366 - -
Blo17g00470 891 Gene3D Helix hairpin bin 368 424 - -
Blo17g00470 891 ProSiteProfiles KHA domain profile. 818 891 IPR021789 -
Blo17g00470 891 Gene3D Jelly Rolls 425 587 IPR014710 -
Blo17g00470 891 ProSiteProfiles Ankyrin repeat profile. 675 707 IPR002110 GO:0005515
Blo17g00470 891 Gene3D - 599 706 IPR036770 -
Blo17g00470 891 ProSiteProfiles Ankyrin repeat profile. 642 674 IPR002110 GO:0005515
Blo17g00470 891 SMART ANK_2a 675 704 IPR002110 GO:0005515
Blo17g00470 891 SMART ANK_2a 642 671 IPR002110 GO:0005515
Blo17g00470 891 SMART ANK_2a 772 802 IPR002110 GO:0005515
Blo17g00470 891 SMART ANK_2a 609 638 IPR002110 GO:0005515
Blo17g00470 891 SMART ANK_2a 739 768 IPR002110 GO:0005515
Blo17g00470 891 SMART ANK_2a 706 735 IPR002110 GO:0005515
Blo17g00470 891 PANTHER POTASSIUM CHANNEL AKT1 51 890 IPR045319 GO:0005249|GO:0006813
Blo17g00470 891 Pfam Ion transport protein 122 366 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Blo17g00470 891 Gene3D - 120 367 - -
Blo17g00470 891 Pfam Cyclic nucleotide-binding domain 461 569 IPR000595 -
Blo17g00470 891 CDD CAP_ED 441 579 IPR000595 -
Blo17g00470 891 PANTHER POTASSIUM CHANNEL SKOR-LIKE 51 890 - -
Blo17g00470 891 MobiDBLite consensus disorder prediction 37 57 - -
Blo17g00470 891 Coils Coil 50 70 - -
Blo17g00470 891 ProSiteProfiles Ankyrin repeat region circular profile. 642 674 - -
Blo17g00470 891 SUPERFAMILY cAMP-binding domain-like 369 583 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo14g00462 Blo-Chr14:5703453 Blo17g00470 Blo-Chr17:6596870 7.66E-126 dispersed
Blo17g00470 Blo-Chr17:6596870 Blo04g00389 Blo-Chr4:3139962 1.29E-06 dispersed
Blo01g00589 Blo-Chr1:6465163 Blo17g00470 Blo-Chr17:6596870 7.27E-06 transposed
Blo17g00470 Blo-Chr17:6596870 Blo18g00475 Blo-Chr18:5596545 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00470 K21867 - mnt:21409781 1311.59