Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00478 ATGCAGAATCGGTGTGTCAACATGATTGCTCATCTTTTCAATGCGCCGCTTGGAGAGTCCGAGACGGCGATGGGCGTCGGAACGGTGGGGTCGTCGGAGGCCATTATGCTTGCCGGCTTGGCTTTTAAGAGAAAATGGCAGAACAAAATGAAAGCAGCTGGAAAACCCCATGATAAGCCCAATATCGTCACCGGAGCCAATGTCCAGGTGTGCTGGGAGAAATTTGCAAGATACTTTGAGGTGGAGCTGAAGGAAGTGAAGTTGAGGGAAGGGTACTATGTGATGGACCCAAAGAAAGCTGTGGAGATGGTCGACGAGAACACCATCTGTGTGGCTGCAATTCTCGGTTCTACGCTCAATGGAGAATTTGAAGACGTTAAACTCTTGAATGACCTCTTGACAGAGAAAAACAAGCAAACTGGATGGGACACTCCTATTCATGTTGATGCAGCAAGCGGGGGGTTCATTGCTCCATTTCTTTACCCTGAGCTTGAGTGGGACTTCAGGCTGCCATTGGTGAAAAGCATCAACGTCAGTGGGCATAAATATGGACTTGTTTATGCTGGTATCGGGTGGGTTATTTGGAGGAACAAGGAGGATTTGCCTGACGAACTCATTTTCCATATCAACTATCTTGGAGCTGATCAACCTACTTTCACCCTCAACTTCTCGAAAGGCTCTAGCCAAGTCATTGCTCAATACTACCAGCTTATTCGCTTGGGATATGAAGGATATAGAAACGTCATGGAAAATTGCCGAGAACACGCGAACATACTAAGAGAAGGATTGGAAAAGACGGGCCGTTTCACCATCGTCTCAAAGGACGAAGGAGTCCCCTTAGTCGCCTTCTCTCTCAAAGACAACAGCTGCCACAACGAGTTTGAGATTTCCGACCTGTTGAGGCGCTTCGGCTGGATAGTGCCGGCCTACACCATGCCAGCCGATGCACAACACATAACCGTCCTACGAGTCGTAATTCGCGAAGATTTTTCTTGCACGCTTGCCGAACGCCTAGTCGGTGATATCGAAAAAGTTCTACACGAACTCGACACCCTTCCTGCCCGAGTGGTGACGACTAAAGTGGAATCCATGAAAGTTAAAGTCGCTGAGGAAGTGGCCCCGGAGGATGGGACTGTGACGGTGATTATCAAGAAGAGCGACATGGATGTCGAGAAGGAGGTGACTGCGATTTGGAAGAAGTTTGTGGACAACAGGAAGAAGAAGAATGGTGTTTGCTAG 1239 48.51 MQNRCVNMIAHLFNAPLGESETAMGVGTVGSSEAIMLAGLAFKRKWQNKMKAAGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPKKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLTEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCREHANILREGLEKTGRFTIVSKDEGVPLVAFSLKDNSCHNEFEISDLLRRFGWIVPAYTMPADAQHITVLRVVIREDFSCTLAERLVGDIEKVLHELDTLPARVVTTKVESMKVKVAEEVAPEDGTVTVIIKKSDMDVEKEVTAIWKKFVDNRKKKNGVC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6793866 6796313 - BLOR08024 Blo17g00478 72866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00478 412 SUPERFAMILY PLP-dependent transferases 1 349 IPR015424 -
Blo17g00478 412 Gene3D - 266 353 - -
Blo17g00478 412 Gene3D - 1 265 IPR015421 GO:0003824
Blo17g00478 412 PANTHER GLUTAMATE DECARBOXYLASE 1 412 - -
Blo17g00478 412 PANTHER GLUTAMATE DECARBOXYLASE 1 412 IPR010107 GO:0004351|GO:0006536|GO:0030170
Blo17g00478 412 Pfam Pyridoxal-dependent decarboxylase conserved domain 1 286 IPR002129 GO:0016830|GO:0019752|GO:0030170
Blo17g00478 412 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 1 349 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo15g00034 Blo-Chr15:266765 Blo17g00478 Blo-Chr17:6793866 0 dispersed
Blo17g00126 Blo-Chr17:1161328 Blo17g00478 Blo-Chr17:6793866 2.73E-06 dispersed
Blo17g00478 Blo-Chr17:6793866 Blo18g00485 Blo-Chr18:5852115 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00478 K01580 - pvy:116131519 712.99