Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo17g00504 ATGGCATCTTCTTCATCCAACTCCCCCTGTGCAGCCTGCAAATTTCTCCGCCGGAAATGTCAGCTTGAGTGCGTTTTCGCTCCCTACTTCCCGCCTGACCAACCTCAAAAATTCGCCAACGTACACAAAGTGTTCGGAGCAAGCAATGTCACGAAGCTCCTCAACGAGCTACAACCCCATCAACGGGAAGATGCCGTCAATTCCCTCGCCTACGAGGCTGATATGCGCCTCCGAGATCCGGTCTATGGGTGTGTAGGAGTCATCTCCCTCCTCCAGCACCAACTCCGGCAGCTCCAAATCGACCTCAGCTGCGCAAAATCCGAGCTCTTGAAATACCAAAATCTCGGCCTGACTGGGCACGGCCTCATTGCCGCCGCTGCAGCCGCTGCCACTACGACTCACAATCACCATCACCTACAAAACCTCGGAATCAACCTGTTTGGCTCCGGCAAAGATTACCACCACCACCACCAATTGTTCCCTCGCGATCAGGTCCAGCCGATCGTGAGGGGCTTCGACATAGCCGGAAACAGCGTTTACGATGGCGGTCTCCTTGCGATGAATGTTTCAAGTTTAGGCCAACTCAGTCAGTTTCAGCAACTGAGGGCTGCGGGAGGTGATGATCAGCGCCAGACGATCGATCCCTCT 648 54.78 MASSSSNSPCAACKFLRRKCQLECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELLKYQNLGLTGHGLIAAAAAAATTTHNHHHLQNLGINLFGSGKDYHHHHQLFPRDQVQPIVRGFDIAGNSVYDGGLLAMNVSSLGQLSQFQQLRAAGGDDQRQTIDPS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7740135 7740782 - BLOR08050 Blo17g00504 72892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo17g00504 216 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Blo17g00504 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 175 - -
Blo17g00504 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 175 - -
Blo17g00504 216 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Blo17g00504 216 Coils Coil 88 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01033 Blo-Chr4:13965454 Blo17g00504 Blo-Chr17:7740135 3.08E-48 dispersed
Blo15g00256 Blo-Chr15:2697547 Blo17g00504 Blo-Chr17:7740135 2.16E-54 dispersed
Blo17g00504 Blo-Chr17:7740135 Blo04g00218 Blo-Chr4:1690897 5.66E-49 dispersed
Blo11g00391 Blo-Chr11:3362647 Blo17g00504 Blo-Chr17:7740135 2.72E-66 wgd
Blo17g00504 Blo-Chr17:7740135 Blo18g00496 Blo-Chr18:6148715 1.80E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13526 PF03195 LOB 2.50E-42 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo17g00504 - - jre:109004073 333.954